Co-expression analysis

Gene ID 1618919_at
Gene name hypothetical protein LOC100244316
Homology with ArabidopsisSimilar to At5g05113: unknown protein (HF=4e+0)
Module size 7 genes
NF 0.49
%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.961618919_atBQ797810hypothetical protein LOC100244316-4e+0At5g05113unknown proteinO.I.H.G.S.X.
0.6183.20.971613156_atCF209286hypothetical protein LOC100247989-6e-5At1g53400unknown proteinO.I.H.G.S.X.
0.5980.60.951608054_atCB350151--7e+0At5g04853unknown proteinO.I.H.G.S.X.
0.5577.30.981618446_atCB969242hypothetical protein LOC100253086-1e-85At5g63890ATHDH (HISTIDINOL DEHYDROGENASE)O.I.H.G.S.X.
0.3345.70.981621721_atCD718881hypothetical protein LOC100248049-3e-17At5g08320unknown proteinO.I.H.G.S.X.
0.2937.70.971619373_atCB920390hypothetical protein LOC100258412-5e-50At5g43940HOT5 (sensitive to hot temperatures 5)O.I.H.G.S.X.
0.1819.40.971607923_atCA816873hypothetical protein LOC100245744-4e-1At5g50690AtHSD7 (hydroxysteroid dehydrogenase 7)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4464.10.971607563_atCF203757.1--7e-49At5g61510NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.3853.60.921616530_atCF204280.1--5e-3At3g09230AtMYB1 (myb domain protein 1)O.I.H.G.S.X.
0.3650.70.931618073_atCF414414hypothetical protein LOC100252995-2e+0At3g61190BAP1 (BON ASSOCIATION PROTEIN 1)O.I.H.G.S.X.
0.3548.50.961617340_x_atCF200929.1--5e+0At5g07250ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)O.I.H.G.S.X.
0.3548.50.941616292_atCF209464--2e+0At5g19740peptidase M28 family proteinO.I.H.G.S.X.
0.3548.50.941614556_atCF202952.1--5e-16At2g45010unknown proteinO.I.H.G.S.X.
0.3345.70.931617971_atCB969434--1e+0At3g09800protein bindingO.I.H.G.S.X.
0.3345.70.981606448_atCB347801hypothetical protein LOC100263631-1e-22At4g00585unknown proteinO.I.H.G.S.X.
0.3345.70.981621147_s_atCF415138hypothetical protein LOC100247531-7e-1At5g14530transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3039.40.931617148_atCF204985.1--4e-41At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.2734.00.951606515_atCF202859.1--4e-1At1g15340MBD10O.I.H.G.S.X.
0.2734.00.941613423_a_atCB969431--1e-18At1g65270unknown proteinO.I.H.G.S.X.
0.2734.00.961621710_atCF201680.1--3e-1At1g59690-O.I.H.G.S.X.
0.2530.50.941617546_atCB005059--5e-3At4g23850long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseO.I.H.G.S.X.
0.2530.50.971609562_atCF210167hypothetical protein LOC100255509-5e-52At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.4GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.893.4GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.591.9GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.491.3GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
2.289.9GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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