Co-expression analysis

Gene ID 1618907_x_at
Gene name
Homology with ArabidopsisSimilar to At5g17470: calmodulin-related protein, putative (HF=4e+0)
Module size 6 genes
NF 0.77
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.8093.60.971615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7390.80.981616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.7189.50.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.5779.80.971609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.5072.70.981620380_x_atCF203025.1--1e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.30.941621717_atCF518880--4e+0At5g03495nucleotide bindingO.I.H.G.S.X.
0.7390.80.941609150_x_atCF206331.1--1e+1At5g19240unknown proteinO.I.H.G.S.X.
0.7390.80.961621406_atCF205304.1--1e-13At4g36190serine-type peptidaseO.I.H.G.S.X.
0.6384.30.951606633_atCD801002--2e+0At2g42190unknown proteinO.I.H.G.S.X.
0.6384.30.941617102_atCF202285.1--2e-12At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.6183.20.961608322_x_atCF205688.1--7e-1At5g10890myosin heavy chain-relatedO.I.H.G.S.X.
0.6183.20.961609904_atCF204988.1hypothetical protein LOC100267206-4e-78At5g61410RPEO.I.H.G.S.X.
0.5779.80.951612401_x_atCF201367.1--6e-1At1g07060unknown proteinO.I.H.G.S.X.
0.5577.30.961609907_x_atCF201896.1--8e+0At5g50345-O.I.H.G.S.X.
0.5375.20.951616126_atCF203840.1--8e-11At2g38140PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)O.I.H.G.S.X.
0.5072.70.951622826_x_atCF202930.1--9e+0At2g04845GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.5072.70.971612361_atCF202732.1--3e-58At5g42020BIP2O.I.H.G.S.X.
0.4464.10.891618086_atCB970077hypothetical protein LOC100242385-1e+0At5g63220unknown proteinO.I.H.G.S.X.
0.4464.10.961613940_atCF201923.1--2e+0At1g33475-O.I.H.G.S.X.
0.4057.70.931620371_atCD003792--5e+0At5g22530unknown proteinO.I.H.G.S.X.
0.4057.70.931610632_atCF208658--2e+0Atmg00690-O.I.H.G.S.X.
0.4057.70.931619828_atCF371771hypothetical protein LOC100260718-2e-1At4g21213unknown proteinO.I.H.G.S.X.
0.4057.70.951611255_s_atCF205309.1S-adenosyl-L-methionine decarboxylase-4e+0At2g25080ATGPX1 (GLUTATHIONE PEROXIDASE 1)O.I.H.G.S.X.
0.4057.70.951609911_atCF203708.1--1e+0At3g50730protein kinase, putativeO.I.H.G.S.X.
0.4057.70.961608951_atCF515796--9e-1At5g46090unknown proteinO.I.H.G.S.X.
0.4057.70.961617507_s_atCF206215.1--4e+0Atmg00550-O.I.H.G.S.X.
0.3954.90.931614223_atCF202055.1--3e+0At5g14400CYP724A1O.I.H.G.S.X.
0.3853.60.961610994_x_atCF203231.1--1e+0At1g48530-O.I.H.G.S.X.
0.3650.70.921620746_atCF201365.1--1e+1At4g17720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3650.70.931613248_atCF202371.1--4e-3At3g05590RPL18 (RIBOSOMAL PROTEIN L18)O.I.H.G.S.X.
0.3650.70.961609173_atCF373658--2e+0At1g27350-O.I.H.G.S.X.
0.3650.70.971621187_s_atCF201896.1--8e+0At5g50345-O.I.H.G.S.X.
0.3548.50.931618665_atCD799476--7e-1At5g56070unknown proteinO.I.H.G.S.X.
0.3548.50.931612513_atCF203588.1hypothetical protein LOC100250896-7e-49At5g50920CLPC1O.I.H.G.S.X.
0.3548.50.961607300_atCF206446.1--9e-51At2g47650UXS4 (UDP-XYLOSE SYNTHASE 4)O.I.H.G.S.X.
0.3548.50.881607930_atCF201821.1--2e-1At5g05210nucleolar matrix protein-relatedO.I.H.G.S.X.
0.3446.80.861611893_x_atCF201821.1--2e-1At5g05210nucleolar matrix protein-relatedO.I.H.G.S.X.
0.3446.80.931614615_s_atCF203062.1--4e+0At2g04170meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3243.10.941615833_s_atCF202514.1similar to putative polyubiquitin (UBQ10)-5e-1At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.3243.10.901613898_x_atCF201438.1--4e+0At2g27229unknown proteinO.I.H.G.S.X.
0.3141.30.961609341_s_atCF202467.1hypothetical protein LOC100265359-2e-3At5g40630ubiquitin family proteinO.I.H.G.S.X.
0.3141.30.971613337_x_atCF204544.1--3e-1At4g28703-O.I.H.G.S.X.
0.3039.40.931622661_x_atCF206215.1--4e+0Atmg00550-O.I.H.G.S.X.
0.2937.70.901620668_s_atCF206489.1--2e-1At3g60530zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2937.70.901622768_x_atCF201098.1--3e+0At2g07785NADH-ubiquinone oxidoreductase, putativeO.I.H.G.S.X.
0.2937.70.931608216_atCF513968--4e+0At5g20740invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2937.70.961618973_s_atCF204369.1hypothetical protein LOC100267103-1e+0At3g61560reticulon family protein (RTNLB6)O.I.H.G.S.X.
0.2837.70.891618593_x_atCF202067.1--2e+0At1g30460CPSF30O.I.H.G.S.X.
0.2734.00.931614011_x_atCF205848.1--3e+0At4g12990unknown proteinO.I.H.G.S.X.
0.2734.00.961620264_x_atCF201907.1--2e-1At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.2734.00.861610947_atCF202919.1--7e+0At5g09711unknown proteinO.I.H.G.S.X.
0.2734.00.941610214_atCF201529.1--1e+0At3g27070TOM20-1 (translocase outer membrane 20-1)O.I.H.G.S.X.
0.2734.00.951612692_atCF207590hypothetical LOC100254134-4e+0At4g24980-O.I.H.G.S.X.
0.2632.00.911613805_x_atCF206124.1--1e-1At1g50060pathogenesis-related protein, putativeO.I.H.G.S.X.
0.2632.00.931619885_atCF202348.1hypothetical protein LOC100249027-4e-15At3g18130RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436352Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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