Co-expression analysis

Gene ID 1618907_x_at
Gene name
Homology with ArabidopsisSimilar to At5g17470: calmodulin-related protein, putative (HF=4e+0)
Module size 6 genes
NF 0.77
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.8093.60.971615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7390.80.981616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.7189.50.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.5779.80.971609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.5072.70.981620380_x_atCF203025.1--1e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436352Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.26237.1.A1_at, orthologous to the query gene, 1618907_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.26237.1.A1_atAt5g17470--4e+0At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.5072.4Ta.9624.2.S1_x_atAt5g17470--4e+0At4g40042peptidaseO.I.H.G.S.X.
0.5072.4Ta.12565.1.S1_atAt5g17470--2e-3At4g24690ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.3651.9AFFX-Tae-r2-Bs-thr-5_s_atAt5g17470--O.I.H.G.S.X.
0.2329.0Ta.5057.3.A1_atAt5g17470Profilin /// Profilin-2e-12At4g29350PFN2 (PROFILIN 2)O.I.H.G.S.X.
0.2024.0Ta.27101.10.S1_x_atAt5g17470--1e-26At5g10980histone H3O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage