Co-expression analysis

Gene ID 1618907_x_at
Gene name
Homology with ArabidopsisSimilar to At5g17470: calmodulin-related protein, putative (HF=4e+0)
Module size 6 genes
NF 0.77
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.8093.60.971615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7390.80.981616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.7189.50.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.5779.80.971609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.5072.70.981620380_x_atCF203025.1--1e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436352Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HV_CEa0002A03r2_at, orthologous to the query gene, 1618907_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1HV_CEa0002A03r2_atAt5g17470--8e+0At4g23080unknown proteinO.I.H.G.S.X.
0.4053.1Contig12269_s_atAt5g17470--8e-10At4g30850HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)O.I.H.G.S.X.
0.3037.0Contig5487_s_atAt5g17470--3e-1At5g65207unknown proteinO.I.H.G.S.X.
0.2630.4Contig1068_atAt5g17470--2e-4At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.2630.4Contig4745_atAt5g17470--2e+0At5g37520unknown proteinO.I.H.G.S.X.
0.2326.1Contig7060_atAt5g17470--4e-8At2g02570nucleic acid bindingO.I.H.G.S.X.
0.1716.9Contig4360_atAt5g17470--2e-6At5g61500ATG3O.I.H.G.S.X.
0.1412.9Contig10432_atAt5g17470--2e-29At3g60750transketolase, putativeO.I.H.G.S.X.
0.1210.4Contig3900_atAt5g17470--5e-2At2g27420cysteine proteinase, putativeO.I.H.G.S.X.
0.119.4EBro03_SQ005_C24_s_atAt5g17470--4e+0At5g40180unknown proteinO.I.H.G.S.X.
0.064.8HV_CEb0017F03r2_s_atAt5g17470light-harvesting complex I-2e-11At3g54890LHCA1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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