CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618907_x_at

Gene name
Homology with Arabidopsis Similar to At5g17470: calmodulin-related protein, putative (HF=4e+0)

Module size 6 genes

NF 0.77

%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1618907_x_at CF202612.1 - - 4e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.80 93.6 0.97 1615753_at CF207576 - - 2e-11 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.73 90.8 0.98 1616230_x_at CF202354.1 - - 2e+1 At5g43510 - O.I. H.G. S.X.
0.71 89.5 0.96 1614054_at CF206745.1 - - 4e-47 At2g27960 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) O.I. H.G. S.X.
0.57 79.8 0.97 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.50 72.7 0.98 1620380_x_at CF203025.1 - - 1e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HV_CEa0002A03r2_at, orthologous to the query gene, 1618907_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 HV_CEa0002A03r2_at At5g17470 - - 8e+0 At4g23080 unknown protein O.I. H.G. S.X.
0.40 53.1 Contig12269_s_at At5g17470 - - 8e-10 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.30 37.0 Contig5487_s_at At5g17470 - - 3e-1 At5g65207 unknown protein O.I. H.G. S.X.
0.26 30.4 Contig1068_at At5g17470 - - 2e-4 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.26 30.4 Contig4745_at At5g17470 - - 2e+0 At5g37520 unknown protein O.I. H.G. S.X.
0.23 26.1 Contig7060_at At5g17470 - - 4e-8 At2g02570 nucleic acid binding O.I. H.G. S.X.
0.17 16.9 Contig4360_at At5g17470 - - 2e-6 At5g61500 ATG3 O.I. H.G. S.X.
0.14 12.9 Contig10432_at At5g17470 - - 2e-29 At3g60750 transketolase, putative O.I. H.G. S.X.
0.12 10.4 Contig3900_at At5g17470 - - 5e-2 At2g27420 cysteine proteinase, putative O.I. H.G. S.X.
0.11 9.4 EBro03_SQ005_C24_s_at At5g17470 - - 4e+0 At5g40180 unknown protein O.I. H.G. S.X.
0.06 4.8 HV_CEb0017F03r2_s_at At5g17470 light-harvesting complex I - 2e-11 At3g54890 LHCA1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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