Co-expression analysis

Gene ID	1618907_x_at
Gene name
Homology with Arabidopsis	Similar to At5g17470: calmodulin-related protein, putative (HF=4e+0)
Module size	6 genes
NF	0.77
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.96	1614054_at	CF206745.1	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.55656.1.S1_at, orthologous to the query gene, 1618907_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.1	GmaAffx.55656.1.S1_at	At5g17470	-	-	2e-1	At5g50720	ATHVA22E	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.16878.1.S1_at	At5g17470	-	-	4e+0	At5g37930	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.53682.1.S1_at	At5g17470	-	-	4e-3	At1g28340	AtRLP4 (Receptor Like Protein 4)	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.8889.1.S1_s_at	At5g17470	-	-	6e-1	At4g18590	-	O.I.	H.G.	S.X.	Please select
0.08	11.0	Gma.17095.2.S1_at	At5g17470	-	-	3e+0	At5g61250	AtGUS1 (Arabidopsis thaliana glucuronidase 1)	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.5763.1.S1_at	At5g17470	-	-	1e+0	At5g13070	MSF1-like family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	Gma.7439.1.S1_at	At5g17470	-	-	3e-2	At4g15885	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.2338.3.S1_at	At5g17470	-	-	3e-48	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage