Co-expression analysis

Gene ID	1618875_s_at
Gene name	hypothetical protein LOC100266914
Homology with Arabidopsis	Similar to At1g51950: IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18) (HF=1e-1)
Module size	6 genes
NF	0.59
%ile	86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1618875_s_at	CF214574	hypothetical protein LOC100266914	-	1e-1	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1622725_at	CF513192	hypothetical protein LOC100260366	-	7e+0	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.96	1617513_at	CF203551.1	hypothetical protein LOC100266914	-	1e-1	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1619436_at	CF372293	hypothetical protein LOC100268063	-	5e-3	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1622022_at	CF212947	hypothetical protein LOC100266079	-	2e-28	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1614876_at	CF213268	hypothetical protein LOC100244642	-	1e+0	At1g73510	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
4.3	97.2	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
4.1	96.9	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
3.6	96.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.2	94.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.8	93.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.7	93.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.5	91.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.5	91.9	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.5	91.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage