Co-expression analysis

Gene ID 1618848_at
Gene name hypothetical protein LOC100261550
Homology with ArabidopsisSimilar to At4g25810: XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) (HF=6e-10)
Module size 6 genes
NF 0.60
%ile 86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.961618848_atCB977336hypothetical protein LOC100261550-6e-10At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)O.I.H.G.S.X.
0.7390.80.951608617_atCB922233hypothetical protein LOC100253171-9e-3At3g55646unknown proteinO.I.H.G.S.X.
0.6384.30.951616160_a_atCB977336hypothetical protein LOC100261550-6e-10At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)O.I.H.G.S.X.
0.5577.30.961617161_atCB347813hypothetical LOC100252186-5e-1At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.4260.10.941608078_s_atCB346850hypothetical LOC100252101-8e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4057.70.951621210_atCB979564hypothetical protein LOC100254184-2e-9At1g68510LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.4GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM287894Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM436373Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage