Co-expression analysis

Gene ID	1618835_s_at
Gene name	hypothetical protein LOC100255405
Homology with Arabidopsis	Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=2e-11)
Module size	14 genes
NF	0.74
%ile	96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.2	0.89	1618835_s_at	BQ797163	hypothetical protein LOC100255405	-	2e-11	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.93	99.2	0.89	1619917_s_at	CF518071	glutathione S-transferase	-	6e-2	At5g50830	unknown protein	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.88	1617940_at	CA809342	hypothetical protein LOC100266396	-	7e-8	At1g68290	ENDO 2 (endonuclease 2)	O.I.	H.G.	S.X.	Please select
0.87	95.2	0.89	1614658_a_at	CF518071	glutathione S-transferase	-	6e-2	At5g50830	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	93.7	0.90	1616045_a_at	AJ237983.1	proline-rich cell wall protein-like	-	2e+0	At3g47180	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.92	1617171_s_at	AF000371.1	UDP glucose:flavonoid 3-o-glucosyltransferase	-	1e-2	At5g17030	UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.92	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.91	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.90	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.91	1608122_at	CB982493	hypothetical protein LOC100241637	-	4e-1	At4g36100	-	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.89	1616898_at	BQ796057	hypothetical protein LOC100250567	-	4e-1	At5g46013	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.89	1616545_at	CF204572.1	-	-	2e+1	At5g51410	LUC7 N_terminus domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.92	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.9	93.8	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.7	93.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.5	91.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage