Co-expression analysis

Gene ID	1618792_at
Gene name
Homology with Arabidopsis	Similar to At1g61250: SC3 (SECRETORY CARRIER 3) (HF=1e-37)
Module size	15 genes
NF	0.53
%ile	79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.98	1618792_at	CB348194	-	-	1e-37	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1618690_at	CF207597	hypothetical protein LOC100259195	-	3e-16	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.99	1613706_at	CA808981	hypothetical protein LOC100258971	-	2e-15	At4g38930	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1617903_at	CF207014.1	hypothetical protein LOC100266203	-	7e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1614009_at	BQ797920	hypothetical protein LOC100242045	-	4e-19	At1g14000	VIK (VH1-INTERACTING KINASE)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.99	1607761_at	CB974335	hypothetical protein LOC100247652	-	9e-5	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.99	1618130_at	CF511795	hypothetical protein LOC100261654	-	1e+0	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1619759_at	CA814682	hypothetical protein LOC100253701	-	5e-29	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.99	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.99	1622518_at	CF514125	hypothetical protein LOC100255499	-	1e+0	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1620790_at	CF515444	hypothetical protein LOC100249710	-	5e-4	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.99	AFFX-Vvi-actin-3_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.99	1617385_at	CF513590	hypothetical protein LOC100251722	-	2e-87	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.4	91.3	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.3	90.7	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
2.2	89.9	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.7	84.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.6	83.3	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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