Co-expression analysis

Gene ID	1618756_at
Gene name	hypothetical protein LOC100260418
Homology with Arabidopsis	Similar to At5g61150: VIP4 (VERNALIZATION INDEPENDENCE 4) (HF=3e-3)
Module size	6 genes
NF	0.09
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1618756_at	CB977044	hypothetical protein LOC100260418	-	3e-3	At5g61150	VIP4 (VERNALIZATION INDEPENDENCE 4)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1618119_at	CB982784	hypothetical protein LOC100257637	-	4e+0	At4g14420	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1617681_at	BQ797454	hypothetical protein LOC100250646	-	2e-17	At5g22370	QQT1 (QUATRE-QUART 1)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1616267_at	BQ795016	-	-	1e-118	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1614866_at	CA813940	hypothetical protein LOC100251829	-	9e-28	At1g55255	-	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1621766_at	CF209255	hypothetical protein LOC100261468	-	5e-10	At3g21430	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.6	100.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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