Co-expression analysis

Gene ID 1618696_at
Gene name
Homology with ArabidopsisSimilar to At5g52100: crr1 (chlororespiration reduction 1) (HF=1e+0)
Module size 6 genes
NF 0.09
%ile 16.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.861618696_atCB919266--1e+0At5g52100crr1 (chlororespiration reduction 1)O.I.H.G.S.X.
0.1212.10.961621917_atCF208474hypothetical protein LOC100244091-1e-20At3g03420Ku70-binding family proteinO.I.H.G.S.X.
0.077.80.941619462_atCB341985hypothetical protein LOC100251802-6e-21At4g08790nitrilase, putativeO.I.H.G.S.X.
0.066.80.951608779_atCB969675hypothetical protein LOC100243991-3e-23At5g11960unknown proteinO.I.H.G.S.X.
0.066.80.951617689_atCF372853--1e+0At3g22660rRNA processing protein-relatedO.I.H.G.S.X.
0.045.20.961619129_atCF215433hypothetical protein LOC100249981-4e-3At3g51610unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.899.3GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
6.298.8GSM147692Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation21Link to GEO
3.696.0GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
3.294.9GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
3.194.6GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.692.5GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM436410V. riparia (VR, PI588259) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
2.591.9GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436415V. riparia (VR, PI588259) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage