Co-expression analysis

Gene ID 1618682_at
Gene name hypothetical protein LOC100255284
Homology with ArabidopsisSimilar to At5g62160: AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) (HF=5e-5)
Module size 6 genes
NF 0.44
%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7390.80.921618682_atCA814693hypothetical protein LOC100255284-5e-5At5g62160AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)O.I.H.G.S.X.
0.6787.90.931620255_atCF204030.1hypothetical protein LOC100246301-2e-12At1g30220INT2 (INOSITOL TRANSPORTER 2)O.I.H.G.S.X.
0.6787.90.941616294_s_atCD802397hypothetical LOC100256580-4e-5At4g25434ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)O.I.H.G.S.X.
0.5072.70.921621746_atCD003963hypothetical protein LOC100261012-4e-4At5g64230unknown proteinO.I.H.G.S.X.
0.3650.70.941616798_s_atCB009035hypothetical protein LOC100246301-3e-15At1g30220INT2 (INOSITOL TRANSPORTER 2)O.I.H.G.S.X.
0.1616.70.931609135_atCF207623--1e+0At5g56060ATP binding / nucleotide binding / phenylalanine-tRNA ligaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM147690Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation19Link to GEO
2.491.3GSM147676Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation5Link to GEO
2.088.2GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.987.2GSM147694Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation23Link to GEO
1.886.0GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.886.0GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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