Co-expression analysis

Gene ID 1618661_s_at
Gene name hypothetical protein LOC100254504
Homology with ArabidopsisSimilar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=1e-1)
Module size 6 genes
NF 0.19
%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.90.921618661_s_atCF518549hypothetical protein LOC100254504-1e-1At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)O.I.H.G.S.X.
0.5072.70.921613947_atCF605643hypothetical protein LOC100253773-8e-3At3g03520phosphoesterase family proteinO.I.H.G.S.X.
0.3650.70.931606659_s_atCF210179hypothetical protein LOC100244564-2e-19At1g29280WRKY65O.I.H.G.S.X.
0.2734.00.941621277_atCF369061hypothetical protein LOC100252641-2e-24At1g72820mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.1718.20.911606705_atCD721559hypothetical protein LOC100265189-2e-5At3g13310DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X. protein LOC100251627-1e-5At2g46370JAR1 (JASMONATE RESISTANT 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4361.50.841616089_atCF206008.1--5e+0At5g03010kelch repeat-containing proteinO.I.H.G.S.X.
0.4260.10.901616822_atAF220196.1proline-rich protein 1 /// proline rich protein 1-2e-1At1g12100lipid bindingO.I.H.G.S.X.
0.4057.70.891618517_atCB971627hypothetical protein LOC100259328-2e+0At3g12490cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.3853.60.891607449_s_atAY046416.1proline-rich protein 1 /// proline rich protein 1-2e+0At2g10940protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3650.70.931614931_atCF605861hypothetical protein LOC100241227-3e-1At5g04470SIM (SIAMESE)O.I.H.G.S.X.
0.3141.30.931622593_atCF404412hypothetical protein LOC100242684-2e+0At3g11820SYP121 (SYNTAXIN OF PLANTS 121)O.I.H.G.S.X.
0.3039.40.891618364_atCF514983hypothetical protein LOC100260351-2e-6At1g48590C2 domain-containing proteinO.I.H.G.S.X.
0.2937.70.851616853_atCB970417hypothetical protein LOC100253117-1e-16At3g48990AMP-dependent synthetase and ligase family proteinO.I.H.G.S.X.
0.2734.00.851615595_atAF239617.2class I beta-1,3-glucanase-3e-3At4g16260catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.398.8GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM147731Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation60Link to GEO
3.094.2GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
2.491.3GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.390.7GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage