CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618661_s_at

Gene name hypothetical protein LOC100254504
Homology with Arabidopsis Similar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=1e-1)

Module size 6 genes

NF 0.19

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.9 0.92 1618661_s_at CF518549 hypothetical protein LOC100254504 - 1e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.
0.50 72.7 0.92 1613947_at CF605643 hypothetical protein LOC100253773 - 8e-3 At3g03520 phosphoesterase family protein O.I. H.G. S.X.
0.36 50.7 0.93 1606659_s_at CF210179 hypothetical protein LOC100244564 - 2e-19 At1g29280 WRKY65 O.I. H.G. S.X.
0.27 34.0 0.94 1621277_at CF369061 hypothetical protein LOC100252641 - 2e-24 At1g72820 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.17 18.2 0.91 1606705_at CD721559 hypothetical protein LOC100265189 - 2e-5 At3g13310 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.08 8.5 0.91 1610591_at CB923320 hypothetical protein LOC100251627 - 1e-5 At2g46370 JAR1 (JASMONATE RESISTANT 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	61.5	0.84	1616089_at	CF206008.1	-	-	5e+0	At5g03010	kelch repeat-containing protein	O.I.	H.G.	S.X.
0.42	60.1	0.90	1616822_at	AF220196.1	proline-rich protein 1 /// proline rich protein 1	-	2e-1	At1g12100	lipid binding	O.I.	H.G.	S.X.
0.40	57.7	0.89	1618517_at	CB971627	hypothetical protein LOC100259328	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.
0.38	53.6	0.89	1607449_s_at	AY046416.1	proline-rich protein 1 /// proline rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.36	50.7	0.93	1614931_at	CF605861	hypothetical protein LOC100241227	-	3e-1	At5g04470	SIM (SIAMESE)	O.I.	H.G.	S.X.
0.31	41.3	0.93	1622593_at	CF404412	hypothetical protein LOC100242684	-	2e+0	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.
0.30	39.4	0.89	1618364_at	CF514983	hypothetical protein LOC100260351	-	2e-6	At1g48590	C2 domain-containing protein	O.I.	H.G.	S.X.
0.29	37.7	0.85	1616853_at	CB970417	hypothetical protein LOC100253117	-	1e-16	At3g48990	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.
0.27	34.0	0.85	1615595_at	AF239617.2	class I beta-1,3-glucanase	-	3e-3	At4g16260	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.25	30.5	0.86	1615200_at	CF608514	-	-	2e-1	At2g10550	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 98.8 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM147731 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 60
3.0 94.2 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.4 91.3 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.3 90.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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