Co-expression analysis

Gene ID	1618661_s_at
Gene name	hypothetical protein LOC100254504
Homology with Arabidopsis	Similar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=1e-1)
Module size	6 genes
NF	0.19
%ile	27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.92	1618661_s_at	CF518549	hypothetical protein LOC100254504	-	1e-1	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.92	1613947_at	CF605643	hypothetical protein LOC100253773	-	8e-3	At3g03520	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.91	1606705_at	CD721559	hypothetical protein LOC100265189	-	2e-5	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.91	1610591_at	CB923320	hypothetical protein LOC100251627	-	1e-5	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
3.0	94.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the maize gene, Zm.17956.1.A1_at, orthologous to the query gene, 1618661_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	96.4	Zm.17956.1.A1_at	At3g23240	-	-	2e+0	At3g20570	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5792.2.A1_at	At3g23240	-	-	1e+0	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.1685.1.A1_at	At3g23240	hypothetical protein LOC100192950	-	6e-3	At3g18060	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.2321.6.A1_at	At3g23240	hypothetical protein LOC100277354	-	3e-3	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.8336.1.S1_x_at	At3g23240	NAS1 protein	-	4e+0	At2g44360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.10790.1.S1_at	At3g23240	glutamyl-tRNA reductase1 /// hypothetical protein LOC100191548	-	4e-6	At1g58290	HEMA1	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.11977.1.A1_at	At3g23240	-	-	2e+1	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.13744.1.S1_at	At3g23240	guanine nucleotide-binding protein alpha-1 subunit	-	2e-14	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.245.1.S1_at	At3g23240	glutathione transferase6	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.3775.1.A1_at	At3g23240	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.19160.1.S1_at	At3g23240	thioredoxin-like protein 1	-	6e-7	At3g04780	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.19241.1.A1_at	At3g23240	WW domain-containing oxidoreductase	-	6e+0	At4g22160	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.2330.1.S1_at	At3g23240	-	-	4e-15	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.11980.1.A1_at	At3g23240	-	-	4e-1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.19306.1.A1_at	At3g23240	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.11255.1.S1_at	At3g23240	hypothetical protein LOC100217136	-	3e-32	At5g40200	DegP9 (DegP protease 9)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.14995.1.A1_at	At3g23240	-	-	2e+0	At1g62960	ACS10 (ACC SYNTHASE 10)	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.13112.2.S1_a_at	At3g23240	-	-	2e-7	At5g63420	emb2746 (embryo defective 2746)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.17990.1.S1_at	At3g23240	hypothetical protein LOC100275286	-	2e+0	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.13871.1.A1_at	At3g23240	R2R3MYB-domain protein	-	2e-5	At1g08810	MYB60 (myb domain protein 60)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.6569.2.S1_a_at	At3g23240	hypothetical protein LOC100276303	-	1e+0	At3g59900	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.13427.1.S1_at	At3g23240	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.16306.1.A1_at	At3g23240	hypothetical protein LOC100273693	-	2e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.10482.1.S1_at	At3g23240	hypothetical protein LOC100280002	-	9e-1	At1g04680	pectate lyase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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