Co-expression analysis

Gene ID	1618661_s_at
Gene name	hypothetical protein LOC100254504
Homology with Arabidopsis	Similar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=1e-1)
Module size	6 genes
NF	0.19
%ile	27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.92	1618661_s_at	CF518549	hypothetical protein LOC100254504	-	1e-1	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.92	1613947_at	CF605643	hypothetical protein LOC100253773	-	8e-3	At3g03520	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.91	1606705_at	CD721559	hypothetical protein LOC100265189	-	2e-5	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.91	1610591_at	CB923320	hypothetical protein LOC100251627	-	1e-5	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
3.0	94.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.116140.1.S1_at, orthologous to the query gene, 1618661_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	TaAffx.116140.1.S1_at	At3g23240	-	-	3e-1	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.7568.1.S1_x_at	At3g23240	-	-	4e-1	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.22757.1.S1_s_at	At3g23240	-	-	1e-4	At1g11700	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.70944.1.S1_s_at	At3g23240	myb-related protein	-	4e-1	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.110192.1.S1_at	At3g23240	-	-	1e+1	At5g05657	-	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.28276.2.S1_x_at	At3g23240	-	-	2e+0	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage