CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618661_s_at

Gene name hypothetical protein LOC100254504
Homology with Arabidopsis Similar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=1e-1)

Module size 6 genes

NF 0.19

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.9 0.92 1618661_s_at CF518549 hypothetical protein LOC100254504 - 1e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.
0.50 72.7 0.92 1613947_at CF605643 hypothetical protein LOC100253773 - 8e-3 At3g03520 phosphoesterase family protein O.I. H.G. S.X.
0.36 50.7 0.93 1606659_s_at CF210179 hypothetical protein LOC100244564 - 2e-19 At1g29280 WRKY65 O.I. H.G. S.X.
0.27 34.0 0.94 1621277_at CF369061 hypothetical protein LOC100252641 - 2e-24 At1g72820 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.17 18.2 0.91 1606705_at CD721559 hypothetical protein LOC100265189 - 2e-5 At3g13310 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.08 8.5 0.91 1610591_at CB923320 hypothetical protein LOC100251627 - 1e-5 At2g46370 JAR1 (JASMONATE RESISTANT 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 98.8 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM147731 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 60
3.0 94.2 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.4 91.3 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.3 90.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Inter-species module comparison

A co-expression module including the rice gene, Os04g0547500, orthologous to the query gene, 1618661_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 Os04g0547500 At3g23240 - - 5e-4 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. H.G. S.X.
0.92 99.1 Os08g0426200 At3g23240 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.
0.83 95.8 Os04g0366500 At3g23240 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.75 91.9 Os04g0134700 At3g23240 - - 1e+1 At5g58500 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) O.I. H.G. S.X.
0.73 91.1 Os01g0528900 At3g23240 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.73 91.1 Os01g0521100 At3g23240 - Hypothetical protein 3e+0 At4g10420 - O.I. H.G. S.X.
0.67 87.2 Os10g0350100 At3g23240 - - 4e-1 At3g47710 bHLH family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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