Co-expression analysis

Gene ID	1618661_s_at
Gene name	hypothetical protein LOC100254504
Homology with Arabidopsis	Similar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=1e-1)
Module size	6 genes
NF	0.19
%ile	27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.92	1618661_s_at	CF518549	hypothetical protein LOC100254504	-	1e-1	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.92	1613947_at	CF605643	hypothetical protein LOC100253773	-	8e-3	At3g03520	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.91	1606705_at	CD721559	hypothetical protein LOC100265189	-	2e-5	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.91	1610591_at	CB923320	hypothetical protein LOC100251627	-	1e-5	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
3.0	94.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.93567.1.S1_at, orthologous to the query gene, 1618661_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	GmaAffx.93567.1.S1_at	At3g23240	-	-	1e-3	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.11793.1.S1_at	At3g23240	-	-	1e+1	Atmg01370	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.12714.1.A1_at	At3g23240	-	-	2e+0	At2g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.80258.1.S1_at	At3g23240	-	-	7e-1	At4g17580	Bax inhibitor-1 family protein / BI-1 family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.55781.1.A1_s_at	At3g23240	-	-	3e+0	At4g26810	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.1007.2.S1_at	At3g23240	-	-	3e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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