CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618613_at

Gene name hypothetical protein LOC100245552
Homology with Arabidopsis Similar to At2g35510: SRO1 (SIMILAR TO RCD ONE 1) (HF=6e-7)

Module size 18 genes

NF 0.39

%ile 57.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.7 0.98 1618613_at BQ795651 hypothetical protein LOC100245552 - 6e-7 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) O.I. H.G. S.X.
0.52 73.9 0.98 1618250_at BQ799300 hypothetical protein LOC100264797 - 5e-9 At3g62770 AtATG18a O.I. H.G. S.X.
0.51 73.2 0.98 1616971_a_at CF208808 hypothetical protein LOC100263708 - 4e-119 At1g60490 ATVPS34 O.I. H.G. S.X.
0.49 69.3 0.98 1618648_at BQ799986 hypothetical protein LOC100249051 - 5e+0 At1g18835 MIF3 (MINI ZINC FINGER) O.I. H.G. S.X.
0.48 68.8 0.98 1607834_at CF216002 hypothetical protein LOC100241190 - 1e+0 At4g34780 auxin-responsive family protein O.I. H.G. S.X.
0.46 66.5 0.98 1619596_at CB973318 hypothetical protein LOC100255105 - 6e-1 At1g65113 SCRL2 (SCR-Like 2) O.I. H.G. S.X.
0.45 64.6 0.98 1613433_at CF208529 hypothetical protein LOC100244689 - 4e+0 At3g26360 unknown protein O.I. H.G. S.X.
0.38 53.6 0.98 1611040_at BQ794523 hypothetical protein LOC100263053 - 3e-7 At1g65020 - O.I. H.G. S.X.
0.36 50.7 0.98 1622722_at CF209124 - - 4e-1 At4g30067 LCR63 (Low-molecular-weight cysteine-rich 63) O.I. H.G. S.X.
0.34 46.8 0.99 1617974_at CD712090 hypothetical protein LOC100267050 - 1e-19 At5g49930 emb1441 (embryo defective 1441) O.I. H.G. S.X.
0.33 45.7 0.98 1615836_at BQ797478 hypothetical protein LOC100258649 - 5e-9 At5g59160 TOPP2 O.I. H.G. S.X.
0.33 45.7 0.98 1622788_at CB920325 hypothetical protein LOC100262286 - 1e-1 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) O.I. H.G. S.X.
0.33 45.7 0.99 1616044_at CF609467 similar to mRNA capping enzyme family protein - 7e-13 At3g09100 mRNA capping enzyme family protein O.I. H.G. S.X.
0.30 39.4 0.98 1613187_at CF214063 hypothetical protein LOC100257160 - 4e-6 At3g56720 unknown protein O.I. H.G. S.X.
0.30 39.4 0.98 1610676_at BQ794329 hypothetical protein LOC100267604 - 1e+0 At4g13360 catalytic O.I. H.G. S.X.
0.29 37.7 0.98 1611156_at CB977232 hypothetical protein LOC100247631 - 1e+1 At3g24250 glycine-rich protein O.I. H.G. S.X.
0.22 25.6 0.98 1611685_at CF207065 hypothetical protein LOC100242423 - 1e-87 At1g79570 protein kinase family protein O.I. H.G. S.X.
0.22 25.6 0.98 1612922_at BQ795022 similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription factor - 1e+0 At1g02510 TPK4 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.7 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.2 89.9 GSM147684 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 13
2.0 88.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.0 88.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.0 88.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
1.9 87.2 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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