CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618595_at

Gene name hypothetical protein LOC100248440
Homology with Arabidopsis Similar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)

Module size 6 genes

NF 0.84

%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1618595_at BQ798258 hypothetical protein LOC100248440 - 5e-1 At4g10950 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.83 94.6 0.98 1621251_s_at BQ795002 hypothetical protein LOC100265471 - 2e+1 Atmg00500 - O.I. H.G. S.X.
0.83 94.6 0.98 1608585_x_at BQ797013 proline-rich cell wall protein-like - 7e-7 At3g07910 - O.I. H.G. S.X.
0.83 94.6 0.99 1615212_at CF406027 ripening-related protein-like - 8e+0 At5g64040 PSAN O.I. H.G. S.X.
0.73 90.8 0.99 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) O.I. H.G. S.X.
0.59 80.6 0.98 1621698_at BQ796130 similar to bHLH transcription factor Upa20 - 8e-2 At3g20510 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.98	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.83	94.6	0.98	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	O.I.	H.G.	S.X.
0.83	94.6	0.98	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	O.I.	H.G.	S.X.
0.83	94.6	0.99	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	O.I.	H.G.	S.X.
0.73	90.8	0.99	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	O.I.	H.G.	S.X.
0.59	80.6	0.98	1621698_at	BQ796130	similar to bHLH transcription factor Upa20	-	8e-2	At3g20510	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	99.0	0.98	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.
0.77	92.3	0.98	1619493_at	CB976133	hypothetical protein LOC100251016	-	2e-30	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.
0.71	89.5	0.96	1609496_at	CB914077	hypothetical protein LOC100258663	-	4e-4	At4g30410	transcription factor	O.I.	H.G.	S.X.
0.71	89.5	0.98	1611979_at	CB979128	hypothetical protein LOC100251016	-	1e-31	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.
0.67	87.9	0.96	1618256_at	BQ797767	hypothetical protein LOC100249006 /// hypothetical protein LOC100246355	-	4e+0	At5g20240	PI (PISTILLATA)	O.I.	H.G.	S.X.
0.67	87.9	0.98	1612393_s_at	CF207031.1	hypothetical protein LOC100253090	-	1e+0	At5g03090	unknown protein	O.I.	H.G.	S.X.
0.63	84.3	0.94	1609278_at	BQ800064	hypothetical protein LOC100243664	-	6e+0	At5g53592	-	O.I.	H.G.	S.X.
0.63	84.3	0.95	1620305_at	AY043233.1	-	-	2e-4	At1g65570	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.
0.63	84.3	0.96	1608916_at	CB007786	hypothetical protein LOC100260173	-	2e-2	At1g73390	-	O.I.	H.G.	S.X.
0.61	83.2	0.98	1618471_at	BQ792541	hypothetical protein LOC100262881	-	7e-12	At3g28917	MIF2 (MINI ZINC FINGER 2)	O.I.	H.G.	S.X.
0.60	81.9	0.98	1622331_at	CD802025	hypothetical protein LOC100264985	-	6e-7	At1g11770	FAD binding / catalytic/ electron carrier/ oxidoreductase	O.I.	H.G.	S.X.
0.55	77.3	0.97	1614182_at	BQ797096	hypothetical protein LOC100241862	-	2e-5	At5g24580	copper-binding family protein	O.I.	H.G.	S.X.
0.52	73.9	0.95	1615630_at	CD798495	hypothetical protein LOC100250058	-	4e-1	At1g26930	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.48	68.8	0.96	1616279_at	BQ796307	hypothetical protein LOC100260173	-	1e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	O.I.	H.G.	S.X.
0.47	67.7	0.96	1616617_at	AF195654.1	SCUTL2	-	3e-5	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.
0.46	66.5	0.98	1615067_s_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	O.I.	H.G.	S.X.
0.42	60.1	0.97	1613900_at	BQ792601	hypothetical protein LOC100247559	-	9e-16	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.
0.42	60.1	0.95	1610027_at	CD798118	hypothetical protein LOC100253090	-	5e-2	At1g12550	oxidoreductase family protein	O.I.	H.G.	S.X.
0.40	57.7	0.95	1616104_at	CB004955	hypothetical protein LOC100252339	-	7e-3	At2g16580	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.40	57.7	0.97	1608482_s_at	CB979729	hypothetical protein LOC100267921	-	7e+0	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.
0.39	54.9	0.95	1610123_at	CB009127	hypothetical protein LOC100268010	-	1e+0	At4g15715	-	O.I.	H.G.	S.X.
0.38	53.6	0.98	1611561_a_at	CD800254	hypothetical protein LOC100240998	-	2e-2	At4g36850	-	O.I.	H.G.	S.X.
0.37	51.7	0.93	1621708_at	CD719628	hypothetical LOC100247368	-	9e-5	At1g73750	-	O.I.	H.G.	S.X.
0.36	50.7	0.98	1617620_at	CB919332	hypothetical protein LOC100243687	-	1e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.33	45.7	0.93	1620278_at	CD798169	hypothetical protein LOC100255447	-	2e-4	At4g13620	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.33	45.7	0.94	1609181_at	CF606070	hypothetical protein LOC100246904	-	3e-1	At3g51420	SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)	O.I.	H.G.	S.X.
0.33	45.7	0.94	1621352_at	BQ794457	hypothetical protein LOC100250600	-	3e-1	At1g74930	ORA47	O.I.	H.G.	S.X.
0.32	43.1	0.92	1622830_at	CB923401	hypothetical protein LOC100265895	-	6e-23	At1g76160	sks5 (SKU5 Similar 5)	O.I.	H.G.	S.X.
0.30	39.4	0.98	1612107_at	CF405996	hypothetical protein LOC100248597	-	6e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.84	1606690_at	CD797991	R2R3 Myb24 transcription factor	-	1e-28	At5g40350	MYB24 (myb domain protein 24)	O.I.	H.G.	S.X.
0.29	37.7	0.91	1611723_at	CF604698	hypothetical protein LOC100268134	-	6e-9	At5g20250	DIN10 (DARK INDUCIBLE 10)	O.I.	H.G.	S.X.
0.29	37.7	0.92	1606931_at	CD797978	hypothetical protein LOC100266572	-	3e-4	At1g56230	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.94	1617331_at	CB348070	hypothetical protein LOC100242353	-	2e-12	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.
0.29	37.7	0.95	1612185_at	CB008768	hypothetical protein LOC100245556	-	3e-10	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.
0.28	37.7	0.95	1608955_at	CF209812	hypothetical protein LOC100254904	-	6e-2	At4g28570	alcohol oxidase-related	O.I.	H.G.	S.X.
0.28	37.7	0.96	1622096_at	BQ793294	hypothetical protein LOC100243077	-	4e+0	At3g21490	copper-binding family protein	O.I.	H.G.	S.X.
0.27	34.0	0.89	1619978_at	CB977451	-	-	1e+0	At5g50801	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.91	1617876_a_at	BQ797033	ripening-related protein-like	-	2e+0	At4g40100	ABA-responsive protein-related	O.I.	H.G.	S.X.
0.26	32.0	0.87	1611217_at	BQ797506	hypothetical protein LOC100243643	-	3e-9	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	O.I.	H.G.	S.X.
0.26	32.0	0.94	1612144_at	CB971934	-	-	2e+0	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.
0.25	30.5	0.92	1607606_at	CB005105	hypothetical protein LOC100257132	-	1e+0	At5g47410	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.94	1617611_at	BQ795025	-	-	1e+0	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	O.I.	H.G.	S.X.
0.25	30.5	0.97	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.3 90.7 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.3 90.7 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.3	95.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.3	90.7	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1618595_at
Gene name	hypothetical protein LOC100248440
Homology with Arabidopsis	Similar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)
Module size	6 genes
NF	0.84
%ile	98.8

Co-expression analysis

Gene ID 1618595_at Gene name hypothetical protein LOC100248440 Homology with ArabidopsisSimilar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1) Module size 6 genes NF 0.84 %ile 98.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1618595_at

Gene name hypothetical protein LOC100248440
Homology with Arabidopsis Similar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)

Module size 6 genes

NF 0.84

%ile 98.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays