Co-expression analysis

Gene ID	1618595_at
Gene name	hypothetical protein LOC100248440
Homology with Arabidopsis	Similar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)
Module size	6 genes
NF	0.84
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1621698_at	BQ796130	similar to bHLH transcription factor Upa20	-	8e-2	At3g20510	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.3	90.7	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.7446.1.S1_at, orthologous to the query gene, 1618595_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	Ptp.7446.1.S1_at	At4g10950	hypothetical protein	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.15088.1.S1_at	At4g10950	hypothetical protein	-	7e-3	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.149893.1.S1_s_at	At4g10950	hypothetical protein	-	1e-8	At3g12950	catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.3640.1.S1_at	At4g10950	hypothetical protein	-	7e-2	At4g09890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.72354.1.S1_at	At4g10950	hypothetical protein	-	3e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.886.1.S1_at	At4g10950	hypothetical protein	-	1e-26	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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