Co-expression analysis

Gene ID 1618595_at
Gene name hypothetical protein LOC100248440
Homology with ArabidopsisSimilar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)
Module size 6 genes
NF 0.84
%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981618595_atBQ798258hypothetical protein LOC100248440-5e-1At4g10950GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.8394.60.981621251_s_atBQ795002hypothetical protein LOC100265471-2e+1Atmg00500-O.I.H.G.S.X.
0.8394.60.981608585_x_atBQ797013proline-rich cell wall protein-like-7e-7At3g07910-O.I.H.G.S.X.
0.8394.60.991615212_atCF406027ripening-related protein-like-8e+0At5g64040PSANO.I.H.G.S.X.
0.7390.80.991610418_atBQ798078hypothetical protein LOC100245385-8e-13At1g20190ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)O.I.H.G.S.X.
0.5980.60.981621698_atBQ796130similar to bHLH transcription factor Upa20-8e-2At3g20510unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436370Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.390.7GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147737Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation66Link to GEO
2.390.7GSM436422V. riparia (VR, PI588259) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436403V. riparia (VR, PI588259) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig4527_x_at, orthologous to the query gene, 1618595_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.7Contig4527_x_atAt4g10950--9e+0At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.7790.8Contig4529_x_atAt4g10950--2e+0At5g26170WRKY50O.I.H.G.S.X.
0.6077.3Contig3260_atAt4g10950--6e+0At2g25565-O.I.H.G.S.X.
0.5572.0Contig20886_atAt4g10950--5e-1At1g52260ATPDIL1-5 (PDI-LIKE 1-5)O.I.H.G.S.X.
0.4458.9HB21O18r_atAt4g10950--6e+0At4g39880ribosomal protein L23 family proteinO.I.H.G.S.X.
0.4458.9Contig4529_s_atAt4g10950--2e+0At5g26170WRKY50O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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