CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618595_at

Gene name hypothetical protein LOC100248440
Homology with Arabidopsis Similar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)

Module size 6 genes

NF 0.84

%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1618595_at BQ798258 hypothetical protein LOC100248440 - 5e-1 At4g10950 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.83 94.6 0.98 1621251_s_at BQ795002 hypothetical protein LOC100265471 - 2e+1 Atmg00500 - O.I. H.G. S.X.
0.83 94.6 0.98 1608585_x_at BQ797013 proline-rich cell wall protein-like - 7e-7 At3g07910 - O.I. H.G. S.X.
0.83 94.6 0.99 1615212_at CF406027 ripening-related protein-like - 8e+0 At5g64040 PSAN O.I. H.G. S.X.
0.73 90.8 0.99 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) O.I. H.G. S.X.
0.59 80.6 0.98 1621698_at BQ796130 similar to bHLH transcription factor Upa20 - 8e-2 At3g20510 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.3 90.7 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.3 90.7 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g10950, orthologous to the query gene, 1618595_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.67 81.6 At4g10950 826694 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBFOM O.I. H.G. S.X.
0.26 24.4 At4g38870 830042 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.19 12.7 At5g66710 836804 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.19 12.7 At3g26480 822253 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:unknown;BMFOPA O.I. H.G. S.X.
0.19 12.7 At5g52290 835305 SHOC1 (SHORTAGE IN CHIASMATA 1) Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. O.I. H.G. S.X.
0.19 12.7 At5g48090 834861 ELP1 (EDM2-LIKE PROTEIN1) F:unknown;P:unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.16 8.8 At3g45440 823682 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.14 6.8 At3g20475 821593 MSH5 (MUTS-HOMOLOGUE 5) Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. O.I. H.G. S.X.
0.14 6.8 At5g23770 832442 RNA binding F:RNA binding;P:unknown;C:unknown;POBFM O.I. H.G. S.X.
0.12 4.9 At1g50910 841513 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.12 4.9 At1g67220 843042 HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2) F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPF O.I. H.G. S.X.
0.11 4.1 At4g33870 829530 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. H.G. S.X.
0.11 4.1 At5g61090 836230 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVA O.I. H.G. S.X.
0.10 3.4 At5g61865 836308 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPAF O.I. H.G. S.X.
0.10 3.4 At5g17680 831634 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. H.G. S.X.
0.10 3.4 At1g74150 843755 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. H.G. S.X.
0.08 2.3 At4g38880 830043 ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3) GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2 O.I. H.G. S.X.
0.07 1.9 At1g76870 844022 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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