Co-expression analysis

Gene ID 1618595_at
Gene name hypothetical protein LOC100248440
Homology with ArabidopsisSimilar to At4g10950: GDSL-motif lipase/hydrolase family protein (HF=5e-1)
Module size 6 genes
NF 0.84
%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981618595_atBQ798258hypothetical protein LOC100248440-5e-1At4g10950GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.8394.60.981621251_s_atBQ795002hypothetical protein LOC100265471-2e+1Atmg00500-O.I.H.G.S.X.
0.8394.60.981608585_x_atBQ797013proline-rich cell wall protein-like-7e-7At3g07910-O.I.H.G.S.X.
0.8394.60.991615212_atCF406027ripening-related protein-like-8e+0At5g64040PSANO.I.H.G.S.X.
0.7390.80.991610418_atBQ798078hypothetical protein LOC100245385-8e-13At1g20190ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)O.I.H.G.S.X.
0.5980.60.981621698_atBQ796130similar to bHLH transcription factor Upa20-8e-2At3g20510unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436370Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.390.7GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147737Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation66Link to GEO
2.390.7GSM436422V. riparia (VR, PI588259) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436403V. riparia (VR, PI588259) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g10950, orthologous to the query gene, 1618595_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6781.6At4g10950826694GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBFOMO.I.H.G.S.X.
0.2624.4At4g38870830042F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.1912.7At5g66710836804protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.1912.7At3g26480822253transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:unknown;BMFOPAO.I.H.G.S.X.
0.1912.7At5g52290835305SHOC1 (SHORTAGE IN CHIASMATA 1)Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility.O.I.H.G.S.X.
0.1912.7At5g48090834861ELP1 (EDM2-LIKE PROTEIN1)F:unknown;P:unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.168.8At3g45440823682lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.146.8At3g20475821593MSH5 (MUTS-HOMOLOGUE 5)Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.O.I.H.G.S.X.
0.146.8At5g23770832442RNA bindingF:RNA binding;P:unknown;C:unknown;POBFMO.I.H.G.S.X.
0.124.9At1g50910841513unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.124.9At1g67220843042HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2)F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPFO.I.H.G.S.X.
0.114.1At4g33870829530peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.H.G.S.X.
0.114.1At5g61090836230nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVAO.I.H.G.S.X.
0.103.4At5g61865836308unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPAFO.I.H.G.S.X.
0.103.4At5g17680831634disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.H.G.S.X.
0.103.4At1g74150843755-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.071.9At1g76870844022-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage