Co-expression analysis

Gene ID	1618521_at
Gene name
Homology with Arabidopsis	Similar to At2g04930: NLI interacting factor (NIF) family protein (HF=8e+0)
Module size	6 genes
NF	0.06
%ile	13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.90	1618521_at	CD007755	-	-	8e+0	At2g04930	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1622789_x_at	CF206467.1	-	-	4e+1	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.98	1620980_s_at	CF209157	hypothetical protein LOC100255909	-	7e-6	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.97	1614457_at	CB969528	hypothetical protein LOC100258086	-	8e-25	At5g42040	RPN12b (Regulatory Particle Non-ATPase 12b)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1613730_at	CB036143	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
1.8	86.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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