Co-expression analysis

Gene ID	1618517_at
Gene name	hypothetical protein LOC100259328
Homology with Arabidopsis	Similar to At3g12490: cysteine protease inhibitor, putative / cystatin, putative (HF=2e+0)
Module size	19 genes
NF	0.49
%ile	73.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	0.86	1618517_at	CB971627	hypothetical protein LOC100259328	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.94	1620725_at	BQ795649	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.90	1607449_s_at	AY046416.1	proline-rich protein 1 /// proline rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.88	1616822_at	AF220196.1	proline-rich protein 1 /// proline rich protein 1	-	2e-1	At1g12100	lipid binding	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.92	1609629_at	CF606022	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.92	1609762_s_at	CD712929	hypothetical protein LOC100257013	-	4e-19	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.91	1621570_at	CB339408	hypothetical protein LOC100255693	-	4e-5	At2g34070	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.91	1618771_s_at	CD715283	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.92	1613672_at	CD715453	hypothetical protein LOC100249746	-	4e-13	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.91	1606705_at	CD721559	hypothetical protein LOC100265189	-	2e-5	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.89	1614803_at	AY046416.1	proline-rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.93	1607804_at	CB004035	-	-	2e-45	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.92	1620628_at	CF403671	neutral invertase	-	2e-37	At1g56560	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.92	1617361_at	CF404356	hypothetical protein LOC100244017	-	3e-50	At4g35630	PSAT	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1611428_at	CD797261	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.91	1618716_at	CB917669	similar to Os06g0665100	-	1e-22	At5g44730	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.94	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.90	1612678_at	CF212553	hypothetical protein LOC100249647	-	3e-14	At1g67940	ATNAP3	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.91	1622047_at	CB968668	hypothetical protein LOC100256407	-	3e-8	At1g75960	AMP-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
1.5	81.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.5	81.7	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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