Co-expression analysis

Gene ID	1618512_at
Gene name	hypothetical protein LOC100252904
Homology with Arabidopsis	Similar to At5g06330: hairpin-responsive protein, putative (HIN1) (HF=5e-7)
Module size	7 genes
NF	0.19
%ile	28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.97	1618512_at	BQ795722	hypothetical protein LOC100252904	-	5e-7	At5g06330	hairpin-responsive protein, putative (HIN1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1609077_at	CF606671	hypothetical protein LOC100264912	-	3e-13	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1609966_a_at	BQ798735	hypothetical protein LOC100249980 /// hypothetical protein LOC100245503	-	3e-1	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1614482_at	CF206009.1	hypothetical protein LOC100241833	-	2e-21	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1614286_at	CB970515	hypothetical protein LOC100240938	-	9e-6	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1612504_s_at	BQ795722	hypothetical protein LOC100252904	-	5e-7	At5g06330	hairpin-responsive protein, putative (HIN1)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1621583_at	CF404733	hypothetical protein LOC100266937	-	3e-12	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.4	95.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.8	93.4	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.6	92.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.3	90.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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