Co-expression analysis

Gene ID	1618494_at
Gene name	hypothetical protein LOC100264126
Homology with Arabidopsis	Similar to At1g18010: - (HF=7e-5)
Module size	6 genes
NF	0.04
%ile	9.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1618494_at	CF405291	hypothetical protein LOC100264126	-	7e-5	At1g18010	-	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1608734_at	CB914120	hypothetical protein LOC100250206	-	9e-5	At1g70330	ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.97	1606843_at	CF405398	-	-	1e+0	At2g46280	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.98	1621779_s_at	BQ794980	hypothetical protein LOC100244148	-	6e-40	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.97	1607188_at	CF405029	hypothetical protein LOC100264664	-	4e-1	At1g10140	-	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1619316_s_at	CB970236	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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