Co-expression analysis

Gene ID	1618478_at
Gene name	hypothetical protein LOC100259390
Homology with Arabidopsis	Similar to At2g34850: MEE25 (maternal effect embryo arrest 25) (HF=4e-3)
Module size	6 genes
NF	0.41
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.94	1618478_at	CF515277	hypothetical protein LOC100259390	-	4e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.93	1609986_at	CB349859	hypothetical protein LOC100261396	-	6e-2	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.93	1609253_at	CB974058	-	-	4e+0	At3g30160	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.93	1612186_at	CD800937	hypothetical protein LOC100241494	-	1e+1	At5g18250	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1608328_s_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.6	99.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.0	98.0	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.2	97.1	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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