CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618465_at

Gene name hypothetical protein LOC100252099
Homology with Arabidopsis Similar to At5g14640: SK13 (SHAGGY-LIKE KINASE 13) (HF=2e-39)

Module size 13 genes

NF 0.28

%ile 39.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1618465_at CB918507 hypothetical protein LOC100252099 - 2e-39 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) O.I. H.G. S.X.
0.46 66.5 0.97 1610763_at CD714601 hypothetical protein LOC100263330 - 1e+0 At3g48880 F-box family protein O.I. H.G. S.X.
0.40 57.7 0.96 1618726_at CB973545 hypothetical protein LOC100265140 - 2e-27 At1g06410 ATTPS7 O.I. H.G. S.X.
0.40 57.7 0.97 1613145_at CF215652 hypothetical protein LOC100255313 - 6e-22 At5g47180 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.40 57.7 0.98 1617401_at CF210307 hypothetical protein LOC100263342 - 1e-1 At5g66730 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.38 53.6 0.95 1611922_at CD799103 hypothetical protein LOC100245782 - 2e-1 At3g49770 unknown protein O.I. H.G. S.X.
0.30 39.4 0.97 1611826_at CB977629 hypothetical protein LOC100262670 - 2e-9 At4g25500 ATRSP35 O.I. H.G. S.X.
0.27 34.0 0.97 1622402_at CD799344 hypothetical protein LOC100241730 - 4e+0 At3g15260 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.27 34.0 0.95 1613535_at CD799741 hypothetical protein LOC100264394 - 2e-25 At5g04510 PDK1 (3'-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) O.I. H.G. S.X.
0.23 27.5 0.96 1617217_at CB342098 hypothetical protein LOC100241455 - 2e-31 At2g46260 BTB/POZ domain-containing protein O.I. H.G. S.X.
0.13 13.3 0.97 1616753_at CB343298 hypothetical protein LOC100262441 - 3e-27 At2g46920 POL (poltergeist) O.I. H.G. S.X.
0.12 12.1 0.97 1621792_at CF414727 hypothetical protein LOC100249673 - 1e-3 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) O.I. H.G. S.X.
0.11 11.3 0.96 1617313_a_at CF513789 hypothetical protein LOC100256994 - 2e-2 At1g64040 TOPP3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.8 96.4 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
2.2 89.9 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM147732 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 61
1.9 87.2 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
1.9 87.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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