CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618432_at

Gene name hypothetical protein LOC100267315
Homology with Arabidopsis Similar to At5g13825: unknown protein (HF=6e+0)

Module size 6 genes

NF 0.62

%ile 89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.95 1618432_at CB345244 hypothetical protein LOC100267315 - 6e+0 At5g13825 unknown protein O.I. H.G. S.X.
0.67 87.9 0.97 1620398_at CA810891 hypothetical LOC100263767 - 1e-3 At3g09690 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.55 77.3 0.96 1609508_at CB976923 hypothetical protein LOC100242787 - 4e-3 At5g45960 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.50 72.7 0.95 1622682_at CB001944 hypothetical protein LOC100256501 - 2e-67 At1g16720 HCF173 (high chlorophyll fluorescence phenotype 173) O.I. H.G. S.X.
0.46 66.5 0.96 1618107_at CF403374 hypothetical protein LOC100263831 - 1e-7 At4g25650 ACD1-LIKE (ACD1-LIKE) O.I. H.G. S.X.
0.40 57.7 0.97 1621016_at CA817314 similar to transporter-related - 3e-10 At5g20380 PHT4 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.95	1618432_at	CB345244	hypothetical protein LOC100267315	-	6e+0	At5g13825	unknown protein	O.I.	H.G.	S.X.
0.67	87.9	0.97	1620398_at	CA810891	hypothetical LOC100263767	-	1e-3	At3g09690	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.55	77.3	0.96	1609508_at	CB976923	hypothetical protein LOC100242787	-	4e-3	At5g45960	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.50	72.7	0.95	1622682_at	CB001944	hypothetical protein LOC100256501	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.
0.46	66.5	0.96	1618107_at	CF403374	hypothetical protein LOC100263831	-	1e-7	At4g25650	ACD1-LIKE (ACD1-LIKE)	O.I.	H.G.	S.X.
0.40	57.7	0.97	1621016_at	CA817314	similar to transporter-related	-	3e-10	At5g20380	PHT4	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	94.6	0.93	1609020_at	CB343738	hypothetical protein LOC100256086	-	5e+0	At3g18460	unknown protein	O.I.	H.G.	S.X.
0.63	84.3	0.93	1608465_at	CF200917.1	hypothetical protein LOC100247572	-	5e+0	At5g39260	ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)	O.I.	H.G.	S.X.
0.60	81.9	0.94	1610735_at	CB341620	hypothetical protein LOC100258753	-	2e-3	At1g18660	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.60	81.9	0.95	1612382_at	CB978155	-	-	2e-1	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.
0.53	75.2	0.92	1621418_at	CB340794	-	-	2e-3	At3g21800	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	O.I.	H.G.	S.X.
0.53	75.2	0.93	1622503_at	CF203022.1	-	-	9e-8	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.
0.50	72.7	0.91	1614870_at	CF516638	-	-	8e-1	At2g21220	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.50	72.7	0.94	1611167_at	CD007118	hypothetical protein LOC100250725	-	2e-50	At5g64840	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	O.I.	H.G.	S.X.
0.50	72.7	0.95	1620634_at	CD720882	hypothetical protein LOC100247245	-	7e-18	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.
0.50	72.7	0.96	1617386_at	CF372270	hypothetical protein LOC100265283	-	2e-27	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.
0.50	72.7	0.96	1614720_at	CD719089	hypothetical protein LOC100263831	-	1e-44	At4g25650	ACD1-LIKE (ACD1-LIKE)	O.I.	H.G.	S.X.
0.46	66.5	0.94	1609491_at	CA809519	similar to peptidase S41 family protein	-	1e-16	At3g57680	peptidase S41 family protein	O.I.	H.G.	S.X.
0.46	66.5	0.95	1622400_at	BQ796203	hypothetical protein LOC100262534	-	1e-3	At2g23390	-	O.I.	H.G.	S.X.
0.44	64.1	0.86	1613143_at	CF512079	-	-	4e+0	At5g27889	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.88	1622706_at	CB002948	-	-	1e+0	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.
0.44	64.1	0.91	1617600_at	CF513622	hypothetical protein LOC100267978	-	2e-5	At3g26490	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.
0.44	64.1	0.95	1606724_at	CF215838	hypothetical protein LOC100247480	-	4e-9	At1g25530	lysine and histidine specific transporter, putative	O.I.	H.G.	S.X.
0.41	58.7	0.92	1619380_at	CF515301	hypothetical protein LOC100264975	-	2e-5	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	O.I.	H.G.	S.X.
0.40	57.7	0.96	1607658_at	CF512465	hypothetical protein LOC100259354	-	2e-31	At2g24820	TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55)	O.I.	H.G.	S.X.
0.33	45.7	0.92	1619299_at	CB968789	hypothetical protein LOC100252463	-	4e+0	At5g23920	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.94	1619486_at	CB001727	hypothetical protein LOC100241765	-	5e+0	At5g50790	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.33	45.7	0.94	1609053_at	BM436398	hypothetical protein LOC100259720	-	2e-6	At2g37970	SOUL-1	O.I.	H.G.	S.X.
0.33	45.7	0.96	1619157_at	AF359521.1	inward rectifying shaker-like K+ channel	-	3e-66	At4g18290	KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.
0.32	43.1	0.91	1609580_at	CF213100	hypothetical protein LOC100260760	-	5e-10	At2g42750	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.31	41.3	0.94	1620639_at	CA817351	hypothetical protein LOC100247658	-	3e-1	At1g10455	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.92	1620650_s_at	CF207485	hypothetical protein LOC100255907	-	7e-5	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.
0.29	37.7	0.85	1617227_at	CD712927	-	-	1e-1	At3g17350	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.91	1608230_at	CB978302	-	-	4e+0	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	O.I.	H.G.	S.X.
0.29	37.7	0.91	1606566_at	CF211641	hypothetical protein LOC100252008	-	1e-12	At4g38840	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.27	34.0	0.93	1608075_at	CA814201	hypothetical protein LOC100243451	-	2e-4	At4g01935	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.94	1617175_at	CB971040	hypothetical protein LOC100267980	-	1e+0	Atmg00910	-	O.I.	H.G.	S.X.
0.26	32.0	0.85	1617634_at	BM436844	-	-	1e+0	At4g27360	dynein light chain, putative	O.I.	H.G.	S.X.
0.26	32.0	0.86	1610137_at	CF519071	-	-	4e+0	At5g40330	MYB23 (MYB DOMAIN PROTEIN 23)	O.I.	H.G.	S.X.
0.25	30.5	0.91	1621020_at	CF403719	-	-	5e-17	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	O.I.	H.G.	S.X.
0.25	30.5	0.92	1616410_at	CD720592	-	-	2e-15	At3g21250	ATMRP6	O.I.	H.G.	S.X.
0.25	30.5	0.94	1610042_at	CF403823	hypothetical protein LOC100261474	-	4e+0	At5g51400	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.94	1610089_at	CB343528	hypothetical protein LOC100241825	-	2e-3	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.
0.25	30.5	0.94	1618249_at	CF510539	hypothetical protein LOC100260378	-	2e-39	At2g24270	ALDH11A3	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.8 93.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.6 92.5 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.6 92.5 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
2.5 91.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.5 91.9 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.4 91.3 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
2.3 90.7 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.3 90.7 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62

Std2 GX	%ile	GSM ID	Assay name	GSE ID
3.5	95.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.8	93.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.7	93.0	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.6	92.5	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.6	92.5	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.4	91.3	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1618432_at
Gene name	hypothetical protein LOC100267315
Homology with Arabidopsis	Similar to At5g13825: unknown protein (HF=6e+0)
Module size	6 genes
NF	0.62
%ile	89.4

Co-expression analysis

Gene ID 1618432_at Gene name hypothetical protein LOC100267315 Homology with ArabidopsisSimilar to At5g13825: unknown protein (HF=6e+0) Module size 6 genes NF 0.62 %ile 89.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1618432_at

Gene name hypothetical protein LOC100267315
Homology with Arabidopsis Similar to At5g13825: unknown protein (HF=6e+0)

Module size 6 genes

NF 0.62

%ile 89.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays