Co-expression analysis

Gene ID	1618429_at
Gene name	hypothetical protein LOC100267238
Homology with Arabidopsis	Similar to At2g40280: dehydration-responsive family protein (HF=5e-4)
Module size	9 genes
NF	0.20
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.95	1618429_at	CB980302	hypothetical protein LOC100267238	-	5e-4	At2g40280	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1612946_at	CF510773	hypothetical protein LOC100244660	-	2e-18	At4g25360	-	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1622764_at	BQ800166	hypothetical protein LOC100263235	-	1e-49	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1619712_at	CB348192	hypothetical protein LOC100253333	-	7e-40	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1618270_at	CF209854	hypothetical protein LOC100263081	-	2e-2	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1620526_at	BQ799509	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1611481_s_at	BQ796815	hypothetical protein LOC100254523	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.98	1617728_at	CF511110	hypothetical protein LOC100247646	-	5e-20	At1g31970	STRS1 (STRESS RESPONSE SUPPRESSOR 1)	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.98	1615824_at	BQ799612	hypothetical protein LOC100255893	-	1e+0	At5g62510	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
1.9	87.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage