Co-expression analysis

Gene ID	1618421_at
Gene name	hypothetical protein LOC100252493
Homology with Arabidopsis	Similar to At3g57560: aspartate/glutamate/uridylate kinase family protein (HF=6e-6)
Module size	10 genes
NF	0.26
%ile	36.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.96	1618421_at	CF604028	hypothetical protein LOC100252493	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1613987_s_at	CA818361	hypothetical protein LOC100245893	-	3e-29	At2g16710	hesB-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1618794_at	CB976136	hypothetical protein LOC100240866	-	1e-13	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1614352_at	CD801544	hypothetical protein LOC100244495	-	2e-15	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1614540_at	CB970409	hypothetical protein LOC100249281	-	1e-13	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1616489_s_at	BQ800343	hypothetical protein LOC100267925	-	7e-12	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1616691_at	CD715631	similar to phosphatidylserine decarboxylase	-	1e-29	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1618880_at	CF214283	hypothetical protein LOC100241859	-	1e-17	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1615392_s_at	CF405619	similar to cysteine protease Cp2	-	9e-10	At4g36880	CP1 (CYSTEINE PROTEINASE1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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