Co-expression analysis

Gene ID	1618406_at
Gene name
Homology with Arabidopsis	Similar to At5g61110: protein binding / zinc ion binding (HF=1e+0)
Module size	23 genes
NF	0.30
%ile	43.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.93	1618406_at	CB914237	-	-	1e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1618200_at	CF604803	-	-	5e+0	At5g54400	methyltransferase	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1621283_at	AF257777.1	H+-pyrophosphatase	-	1e-93	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1606673_at	CB005473	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1606838_at	CB972815	hypothetical protein LOC100268132	-	3e-2	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1612273_at	BQ799966	-	-	3e-47	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1611018_at	CD003886	-	-	1e-78	At3g59870	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1617537_at	CF214567	hypothetical protein LOC100267729	-	7e-2	At1g53460	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1615658_at	CF405207	hypothetical protein LOC100248019	-	2e-2	At3g13160	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1621017_at	CD714910	-	-	5e+0	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1618651_at	CB005890	hypothetical protein LOC100241531	-	5e-13	At5g52960	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1609481_at	BQ799713	-	-	4e-45	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1620794_at	CF568783	-	-	3e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1616747_at	CF205411.1	-	-	1e-15	At4g09012	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1614898_at	CF512424	hypothetical protein LOC100246217	-	4e-12	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1611421_at	CF511233	hypothetical LOC100253088	-	3e-1	At5g50330	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1615292_at	CF214583	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1620009_at	CB968742	hypothetical protein LOC100250669	-	4e-100	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1617158_at	CB920605	hypothetical protein LOC100251931	-	4e-17	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1617022_at	BQ794782	hypothetical protein LOC100265005	-	6e+0	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1622775_at	CF415430	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.8	86.0	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.6	83.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.6	83.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
1.6	83.3	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
1.5	81.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.5	81.7	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
1.5	81.7	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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