Co-expression analysis

Gene ID	1618399_at
Gene name
Homology with Arabidopsis	Similar to At2g33860: ETT (ETTIN) (HF=2e-1)
Module size	15 genes
NF	0.52
%ile	78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	88.6	0.93	1618399_at	CF214752	-	-	2e-1	At2g33860	ETT (ETTIN)	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.95	1612677_at	CF512277	hypothetical protein LOC100252316	-	1e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	0.95	1607061_at	CF214698	hypothetical protein LOC100251235	-	2e-20	At1g75060	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	0.96	1620170_at	CB974375	hypothetical protein LOC100246815	-	1e-4	At4g36920	AP2 (APETALA 2)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1619167_at	CF606864	hypothetical protein LOC100247828	-	7e-105	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1618643_at	CF208002	hypothetical protein LOC100248183	-	7e-1	At3g09930	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1620442_at	CB971589	hypothetical protein LOC100266848	-	1e-15	At3g02110	scpl25 (serine carboxypeptidase-like 25)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1607417_at	CF512464	hypothetical protein LOC100245522	-	1e-4	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1621574_at	CF511059	hypothetical protein LOC100241803	-	3e-2	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1612089_at	CF212718	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1616016_at	CF403186	hypothetical protein LOC100265943	-	4e-1	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1615462_at	CB974047	-	-	5e+0	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1608603_at	BQ795705	hypothetical LOC100242108	-	3e-13	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1618871_at	CF510551	hypothetical protein LOC100265907	-	3e-7	At4g38660	thaumatin, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.96	1617440_at	CF373136	hypothetical protein LOC100247017	-	8e-2	At5g61470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.3	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.9	87.2	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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