Co-expression analysis

Gene ID	1618182_at
Gene name	hypothetical protein LOC100259544
Homology with Arabidopsis	Similar to At5g08690: ATP synthase beta chain 2, mitochondrial (HF=9e-8)
Module size	23 genes
NF	0.43
%ile	64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.9	0.96	1618182_at	CF604629	hypothetical protein LOC100259544	-	9e-8	At5g08690	ATP synthase beta chain 2, mitochondrial	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1608708_at	CF211873	hypothetical protein LOC100255983	-	2e-9	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1614829_at	CF518749	hypothetical protein LOC100265775	-	3e-32	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1618937_at	CB920899	hypothetical protein LOC100255532	-	2e-14	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.97	1609756_at	CF604406	hypothetical protein LOC100263684	-	6e-3	At1g18830	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1607136_at	CF605014	hypothetical protein LOC100257366	-	4e-28	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1611784_at	CB971421	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1613321_at	CF516415	hypothetical protein LOC100244395	-	5e-49	At5g55070	2-oxoacid dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1611869_at	CF609640	hypothetical protein LOC100254356	-	5e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1621533_at	CF514195	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1611994_a_at	CF214487	hypothetical protein LOC100260925	-	7e-8	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1610578_at	BG273711	hypothetical protein LOC100247027	-	1e-13	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1614249_at	CF603283	similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	-	5e-85	At4g28470	RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1613190_at	CF604163	hypothetical protein LOC100244118	-	2e-2	At1g16560	Per1-like family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	AFFX-Vvi-actin-5_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1615384_at	CB981375	hypothetical protein LOC100254141	-	7e-34	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1606508_at	CF405097	hypothetical protein LOC100241508	-	5e-7	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.5	81.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.5	81.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.4	79.9	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.4	79.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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