CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1618102_at

Gene name
Homology with Arabidopsis Similar to At2g18710: SCY1 (SecY Homolog 1) (HF=7e-37)

Module size 6 genes

NF 0.32

%ile 45.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1618102_at CF415084 - - 7e-37 At2g18710 SCY1 (SecY Homolog 1) O.I. H.G. S.X.
0.53 75.2 0.93 1608467_at CD003740 - - 8e-22 At1g17220 FUG1 (fu-gaeri1) O.I. H.G. S.X.
0.31 41.3 0.94 1610514_at AF176655.1 ripening induced protein - 2e-1 At4g33750 - O.I. H.G. S.X.
0.23 27.5 0.94 1613383_at CB922386 - - 5e-68 At5g45390 CLPP4 (CLP PROTEASE P4) O.I. H.G. S.X.
0.18 19.4 0.94 1607773_at CD719602 - - 2e-30 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) O.I. H.G. S.X.
0.18 19.4 0.94 1620794_at CF568783 - - 3e-13 At4g15000 60S ribosomal protein L27 (RPL27C) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.92	1610593_at	CD715465	-	-	1e-35	At4g16390	-	O.I.	H.G.	S.X.
0.67	87.9	0.93	1620815_at	CF568885	-	-	1e-15	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.
0.60	81.9	0.90	1618528_at	CD713086	-	-	6e-18	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.
0.55	77.3	0.94	1619495_at	CA818305	-	-	1e-4	At1g44920	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.90	1607544_at	CF568986	-	-	9e-32	At4g13590	unknown protein	O.I.	H.G.	S.X.
0.46	66.5	0.94	1611053_at	CF405013	-	-	1e-15	At5g28540	BIP1	O.I.	H.G.	S.X.
0.44	64.1	0.94	1613502_at	CA812857	-	-	6e-6	At2g34460	flavin reductase-related	O.I.	H.G.	S.X.
0.37	51.7	0.90	1617031_at	CD010341	-	-	4e-2	At4g02405	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.92	1613793_at	CB913015	-	-	2e-24	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.
0.34	46.8	0.93	1613263_at	CB918718	-	-	2e-12	At4g16580	catalytic	O.I.	H.G.	S.X.
0.33	45.7	0.91	1611351_at	CD717072	-	-	3e-6	At3g04550	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.93	1617585_at	CD005877	-	-	2e-11	At3g14930	HEME1	O.I.	H.G.	S.X.
0.30	39.4	0.92	1617775_at	CF568934	-	-	4e-3	At5g49800	-	O.I.	H.G.	S.X.
0.29	37.7	0.91	1611261_at	CB001661	-	-	4e-16	At3g01370	ATCFM2 (CRM FAMILY MEMBER 2)	O.I.	H.G.	S.X.
0.29	37.7	0.92	1613388_at	CF568873	-	-	1e-9	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.6 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
1.9 87.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.9 87.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
1.8 86.0 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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