Co-expression analysis

Gene ID	1618102_at
Gene name
Homology with Arabidopsis	Similar to At2g18710: SCY1 (SecY Homolog 1) (HF=7e-37)
Module size	6 genes
NF	0.32
%ile	45.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1618102_at	CF415084	-	-	7e-37	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.93	1608467_at	CD003740	-	-	8e-22	At1g17220	FUG1 (fu-gaeri1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.94	1610514_at	AF176655.1	ripening induced protein	-	2e-1	At4g33750	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.94	1613383_at	CB922386	-	-	5e-68	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.94	1607773_at	CD719602	-	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.94	1620794_at	CF568783	-	-	3e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
1.9	87.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
1.8	86.0	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34

Inter-species module comparison

A co-expression module including the barley gene, Contig12543_at, orthologous to the query gene, 1618102_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig12543_at	At2g18710	-	-	4e-7	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig10814_at	At2g18710	-	-	5e-2	At3g02660	emb2768 (EMBRYO DEFECTIVE 2768)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig105_at	At2g18710	-	-	7e-36	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig863_s_at	At2g18710	-	-	3e-6	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig8926_at	At2g18710	-	-	6e-9	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig1337_s_at	At2g18710	-	-	1e+0	At2g37060	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig21329_at	At2g18710	-	-	1e-1	At5g47229	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig8078_at	At2g18710	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig16107_at	At2g18710	-	-	2e+0	At3g09980	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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