Co-expression analysis

Gene ID 1618102_at
Gene name
Homology with ArabidopsisSimilar to At2g18710: SCY1 (SecY Homolog 1) (HF=7e-37)
Module size 6 genes
NF 0.32
%ile 45.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.951618102_atCF415084--7e-37At2g18710SCY1 (SecY Homolog 1)O.I.H.G.S.X.
0.5375.20.931608467_atCD003740--8e-22At1g17220FUG1 (fu-gaeri1)O.I.H.G.S.X.
0.3141.30.941610514_atAF176655.1ripening induced protein-2e-1At4g33750-O.I.H.G.S.X.
0.2327.50.941613383_atCB922386--5e-68At5g45390CLPP4 (CLP PROTEASE P4)O.I.H.G.S.X.
0.1819.40.941607773_atCD719602--2e-30At5g07290AML4 (ARABIDOPSIS MEI2-LIKE 4)O.I.H.G.S.X.
0.1819.40.941620794_atCF568783--3e-13At4g1500060S ribosomal protein L27 (RPL27C)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147686Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation15Link to GEO
2.289.9GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
1.987.2GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.987.2GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147674Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation3Link to GEO
1.886.0GSM147705Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation34Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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