Co-expression analysis

Gene ID	1618091_s_at
Gene name	hypothetical protein LOC100255026
Homology with Arabidopsis	Similar to At3g17020: universal stress protein (USP) family protein (HF=6e-3)
Module size	9 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	0.98	1618091_s_at	CB973873	hypothetical protein LOC100255026	-	6e-3	At3g17020	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1619551_at	CF208204	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1617347_at	CB982365	hypothetical protein LOC100257949	-	7e-18	At3g05810	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.98	1612305_at	BQ797467	hypothetical protein LOC100263408	-	2e-12	At3g15660	GRX4 (GLUTAREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1609947_at	BQ798098	hypothetical protein LOC100262722	-	6e-22	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1613866_s_at	CF510932	hypothetical protein LOC100245100	-	2e-68	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1616873_at	CF403277	hypothetical protein LOC100241265	-	2e-1	At4g21865	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1618248_at	CF514874	hypothetical protein LOC100250810	-	1e-19	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1611560_at	CB915311	hypothetical protein LOC100265794	-	8e-62	At4g38790	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.8	96.4	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.7	96.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.4	95.5	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
3.1	94.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.1	94.6	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.7	93.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage