Co-expression analysis

Gene ID	1618069_at
Gene name
Homology with Arabidopsis	Similar to At3g55254: - (HF=6e+0)
Module size	6 genes
NF	0.05
%ile	10.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.78	1618069_at	CD720173	-	-	6e+0	At3g55254	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1607490_at	CF214086	hypothetical protein LOC100258031	-	1e-5	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.93	1609056_at	CF511437	-	-	4e+0	At3g48208	-	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.96	1620135_at	CF518577	similar to putative isopropylmalate synthase	-	9e-2	At1g74040	IMS1 (2-ISOPROPYLMALATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.96	1619403_at	CF211963	hypothetical protein LOC100263522	-	1e+0	At3g52400	SYP122 (SYNTAXIN OF PLANTS 122)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1608358_at	CD004170	hypothetical protein LOC100266977	-	9e-27	At4g27585	band 7 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.3	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage