Co-expression analysis

Gene ID	1618037_at
Gene name
Homology with Arabidopsis	Similar to At3g01650: RGLG1 (RING domain Ligase1) (HF=3e-1)
Module size	6 genes
NF	0.14
%ile	22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.81	1618037_at	CB911958	-	-	3e-1	At3g01650	RGLG1 (RING domain Ligase1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1610461_at	CF514657	-	-	2e-1	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1617335_at	CF207178	-	-	4e-1	At2g18410	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.96	1619332_at	CF202464.1	hypothetical protein LOC100257476	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.92	1609962_at	CF204018.1	-	-	2e+0	At4g05630	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.95	1611218_at	CB912267	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	98.3	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
4.3	97.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5	95.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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