Co-expression analysis

Gene ID	1617961_at
Gene name	hypothetical protein LOC100242908
Homology with Arabidopsis	Similar to At1g12880: atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12) (HF=4e-5)
Module size	8 genes
NF	0.20
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.96	1617961_at	CB973482	hypothetical protein LOC100242908	-	4e-5	At1g12880	atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1616394_at	CB344590	hypothetical protein LOC100267852	-	1e+0	At3g51830	ATG5	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1622709_s_at	CB339838	hypothetical protein LOC100263191	-	9e-57	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1619148_at	CF513297	hypothetical protein LOC100263958	-	6e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1617238_at	CD800896	hypothetical protein LOC100258246	-	3e-27	At1g63430	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1621862_at	CF510931	hypothetical protein LOC100267900	-	2e+0	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1618544_at	CB976993	similar to pumilio domain-containing protein PPD1	-	4e-20	At4g25880	APUM6 (Arabidopsis Pumilio 6)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.4	91.3	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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