Co-expression analysis

Gene ID 1617961_at
Gene name hypothetical protein LOC100242908
Homology with ArabidopsisSimilar to At1g12880: atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12) (HF=4e-5)
Module size 8 genes
NF 0.20
%ile 29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.961617961_atCB973482hypothetical protein LOC100242908-4e-5At1g12880atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)O.I.H.G.S.X.
0.4361.50.971616394_atCB344590hypothetical protein LOC100267852-1e+0At3g51830ATG5O.I.H.G.S.X.
0.3853.60.971622709_s_atCB339838hypothetical protein LOC100263191-9e-57At5g59690histone H4O.I.H.G.S.X.
0.2225.60.981619148_atCF513297hypothetical protein LOC100263958-6e-2At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.2022.40.971617238_atCD800896hypothetical protein LOC100258246-3e-27At1g63430leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.1515.60.971621862_atCF510931hypothetical protein LOC100267900-2e+0At1g1593040S ribosomal protein S12 (RPS12A)O.I.H.G.S.X.
0.1111.30.971618544_atCB976993similar to pumilio domain-containing protein PPD1-4e-20At4g25880APUM6 (Arabidopsis Pumilio 6)O.I.H.G.S.X.
0.1010.30.971620765_atCF215290hypothetical protein LOC100266143-2e-124At1g20090ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.793.0GSM436406V. riparia (VR, PI588259) LD, 15h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.491.3GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.289.9GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.289.9GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.088.2GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage