Co-expression analysis

Gene ID	1617959_s_at
Gene name	hypothetical protein LOC100243044
Homology with Arabidopsis	Similar to At3g05550: hypoxia-responsive family protein (HF=6e-12)
Module size	6 genes
NF	0.33
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.92	1617959_s_at	CA809016	hypothetical protein LOC100243044	-	6e-12	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.90	1618965_at	CF413630	hypothetical protein LOC100264439	-	4e+0	At4g39810	exonuclease/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.92	1622107_at	CB009545	hypothetical protein LOC100259620	-	2e-40	At5g55560	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1611872_at	CF404465	hypothetical protein LOC100266256	-	8e-50	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.90	1619610_at	CB008850	hypothetical protein LOC100262106	-	4e-20	At5g56660	ILL2	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.91	1615923_at	CA814782	hypothetical protein LOC100259846	-	8e-8	At4g25030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	98.3	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.6	92.5	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage