Co-expression analysis

Gene ID	1617917_at
Gene name
Homology with Arabidopsis	Similar to At1g53100: acetylglucosaminyltransferase (HF=4e+0)
Module size	6 genes
NF	0.15
%ile	23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	64.1	0.94	1617917_at	CF405637	-	-	4e+0	At1g53100	acetylglucosaminyltransferase	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1608135_at	CF206119.1	-	-	1e+0	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.93	1614538_at	AY427198.1	-	-	2e-1	At3g46760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1615204_at	CF371804	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.93	1609630_at	CB002524	-	-	4e-14	At3g14205	phosphoinositide phosphatase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.22520.1.A1_at, orthologous to the query gene, 1617917_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	TaAffx.22520.1.A1_at	At1g53100	-	-	9e+0	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.75	89.8	Ta.16022.1.S1_at	At1g53100	-	-	5e+0	At5g63440	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.1	Ta.8107.1.S1_at	At1g53100	-	-	1e-9	At5g36210	serine-type peptidase	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.27944.1.S1_at	At1g53100	-	-	5e-26	At5g14530	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.3313.1.S1_at	At1g53100	-	-	6e-1	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.27987.1.S1_at	At1g53100	-	-	2e+0	At2g01100	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.11680.1.S1_at	At1g53100	-	-	5e-1	At3g50880	HhH-GPD base excision DNA repair family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.53699.1.S1_s_at	At1g53100	-	-	1e-2	At2g15860	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.3855.1.A1_at	At1g53100	-	-	2e+0	At1g21320	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.9495.2.S1_a_at	At1g53100	-	-	1e+0	At4g32260	ATP synthase family	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.23259.1.A1_a_at	At1g53100	-	-	4e-1	At4g22517	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.25493.1.A1_at	At1g53100	-	-	4e-5	At5g19420	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.7323.1.A1_at	At1g53100	-	-	5e-39	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.755.1.A1_at	At1g53100	-	-	6e-2	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.5583.1.S1_at	At1g53100	-	-	4e-1	At2g31230	ATERF15 (Ethylene-responsive element binding factor 15)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.2319.2.S1_x_at	At1g53100	-	-	8e+0	At4g08270	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6457.1.A1_at	At1g53100	-	-	3e-1	At4g14145	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.30680.1.S1_a_at	At1g53100	-	-	3e-23	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.9307.2.A1_x_at	At1g53100	-	-	5e-7	At3g24360	enoyl-CoA hydratase/isomerase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.28830.2.S1_a_at	At1g53100	-	-	4e-11	At1g30970	SUF4 (suppressor of FRIGIDA4)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.11374.1.S1_at	At1g53100	-	-	3e+0	At3g56610	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.28457.1.A1_at	At1g53100	-	-	2e-2	At5g18230	transcription regulator NOT2/NOT3/NOT5 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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