Co-expression analysis

Gene ID	1617855_at
Gene name
Homology with Arabidopsis	Similar to At5g65220: ribosomal protein L29 family protein (HF=9e-1)
Module size	20 genes
NF	0.47
%ile	69.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.93	1617855_at	CD799718	-	-	9e-1	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.94	1607476_at	CB978990	hypothetical protein LOC100258727	-	4e-14	At3g08860	alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.95	1621034_at	CF406031	hypothetical protein LOC100244738 /// similar to phosphoenolpyruvate carboxykinase /// hypothetical protein LOC100257809	-	4e-110	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1606722_at	AF440310.1	actin depolymerizing factor	-	1e-19	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1619862_at	CB979196	hypothetical protein LOC100251016	-	3e-1	At4g32470	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1621490_at	CF212781	hypothetical protein LOC100256024	-	4e-3	At5g48350	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1621508_at	CB005665	hypothetical protein LOC100260203	-	3e-20	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.94	1611386_at	CD799345	hypothetical protein LOC100266812	-	1e+0	At3g11230	yippee family protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.94	1614444_at	CF517160	hypothetical protein LOC100248687	-	1e+0	At1g49650	cell death associated protein-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1622639_at	CA810871	hypothetical protein LOC100254126	-	1e-4	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.93	1610428_at	CD012983	hypothetical protein LOC100263040	-	2e-4	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1607883_at	CB969241	hypothetical protein LOC100255480	-	5e+0	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1607967_at	CB009400	hypothetical protein LOC100261140	-	4e-1	At3g24860	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1610617_at	CB916396	hypothetical protein LOC100258419	-	6e-3	At2g41475	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.93	1622020_s_at	BQ794212	hypothetical protein LOC100261607	-	1e-8	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1610742_at	CB008464	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1622096_at	BQ793294	hypothetical protein LOC100243077	-	4e+0	At3g21490	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1609101_at	CB921620	hypothetical protein LOC100252214	-	9e-31	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.92	1608955_at	CF209812	hypothetical protein LOC100254904	-	6e-2	At4g28570	alcohol oxidase-related	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1615628_at	CB345697	hypothetical protein LOC100244782	-	5e-1	At4g10080	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	99.5	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.0	99.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.6	99.3	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.1	98.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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