Co-expression analysis

Gene ID	1617850_at
Gene name
Homology with Arabidopsis	Similar to Atmg00480: - (HF=4e+0)
Module size	6 genes
NF	0.05
%ile	11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.72	1617850_at	CF516123	-	-	4e+0	Atmg00480	-	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.98	1607280_at	CF513816	hypothetical protein LOC100259978	-	8e-57	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.98	AFFX-Vvi-actin-M_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.95	1615787_at	BQ797242	similar to elongation factor 2	-	2e-168	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.98	1617577_a_at	BQ796671	hypothetical protein LOC100258303 /// hypothetical protein LOC100265542	-	1e-32	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1607581_at	CF403327	hypothetical protein LOC100258708	-	2e-1	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.0	88.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.9	87.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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