Co-expression analysis

Gene ID 1617846_at
Gene name hypothetical protein LOC100242395
Homology with ArabidopsisSimilar to At3g57870: SCE1 (SUMO CONJUGATION ENZYME 1) (HF=2e-47)
Module size 6 genes
NF 0.53
%ile 79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.961617846_atCF210020hypothetical protein LOC100242395-2e-47At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.6787.90.961622760_atCD719223hypothetical protein LOC100266427-1e+0At3g61920unknown proteinO.I.H.G.S.X.
0.6081.90.961620683_atCA811381hypothetical protein LOC100245630-8e-9At4g26160ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)O.I.H.G.S.X.
0.5072.70.961619820_s_atCA811381hypothetical protein LOC100245630-8e-9At4g26160ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)O.I.H.G.S.X.
0.4057.70.961612005_s_atCB004075--1e-38Atcg00440-O.I.H.G.S.X.
0.2124.00.961611279_s_atCB343789--0Atcg01010-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.5GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436357Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.289.9GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4940.2.S1_a_at, orthologous to the query gene, 1617846_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5674.4Zm.4940.2.S1_a_atAt3g57870--2e-21At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.7490.3------O.I.H.G.S.X.
0.7087.0Zm.15348.2.A1_x_atAt3g57870proline oxidase-5e+0At4g29820CFIM-25O.I.H.G.S.X.
0.6785.8Zm.9701.1.A1_atAt3g57870hypothetical protein LOC100274130-4e-1At1g32070ATNSI (NUCLEAR SHUTTLE INTERACTING)O.I.H.G.S.X.
0.6785.8Zm.3889.1.A1_atAt3g57870Triosephosphate isomerase, cytosolic-1e-24At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.6785.8ZmAffx.1003.1.S1_atAt3g57870peptide chain release factor 2-3e+0At1g11850unknown proteinO.I.H.G.S.X.
0.6481.7Zm.9790.1.A1_atAt3g57870hypothetical protein LOC100192495-1e+0At2g41225unknown proteinO.I.H.G.S.X.
0.6279.8Zm.16959.3.S1_a_atAt3g57870hypothetical protein LOC100192872 /// elongation factor 1-gamma 3-2e-57At1g57720elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.5571.6ZmAffx.1199.1.A1_atAt3g57870--5e-2At3g48610phosphoesterase family proteinO.I.H.G.S.X.
0.5065.7Zm.8149.2.A1_atAt3g57870--6e+0At4g14640CAM8 (CALMODULIN 8)O.I.H.G.S.X.
0.4455.7Zm.13758.1.S1_atAt3g57870UDP-glucuronic acid decarboxylase 1-1e+0At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.4048.5Zm.2688.2.A1_a_atAt3g57870hypothetical protein LOC100273855-5e+0At3g25120mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



Back to the CoP portal site

Back to the KAGIANA project homepage