Co-expression analysis

Gene ID	1617846_at
Gene name	hypothetical protein LOC100242395
Homology with Arabidopsis	Similar to At3g57870: SCE1 (SUMO CONJUGATION ENZYME 1) (HF=2e-47)
Module size	6 genes
NF	0.53
%ile	79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.96	1617846_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1622760_at	CD719223	hypothetical protein LOC100266427	-	1e+0	At3g61920	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1620683_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1619820_s_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1612005_s_at	CB004075	-	-	1e-38	Atcg00440	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1611279_s_at	CB343789	-	-	0	Atcg01010	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.2	89.9	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.3308.1.S1_at, orthologous to the query gene, 1617846_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.3308.1.S1_at	At3g57870	-	-	8e-31	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.14547.1.S1_at	At3g57870	-	-	6e-4	At1g26665	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.829.1.S1_at	At3g57870	-	-	2e-47	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9300.1.S1_at	At3g57870	-	-	5e-1	At3g08770	LTP6	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.4403.1.S1_at	At3g57870	-	-	1e-41	At2g25610	H+-transporting two-sector ATPase, C subunit family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.14353.1.S1_at	At3g57870	-	-	5e-4	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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