Co-expression analysis

Gene ID 1617846_at
Gene name hypothetical protein LOC100242395
Homology with ArabidopsisSimilar to At3g57870: SCE1 (SUMO CONJUGATION ENZYME 1) (HF=2e-47)
Module size 6 genes
NF 0.53
%ile 79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.961617846_atCF210020hypothetical protein LOC100242395-2e-47At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.6787.90.961622760_atCD719223hypothetical protein LOC100266427-1e+0At3g61920unknown proteinO.I.H.G.S.X.
0.6081.90.961620683_atCA811381hypothetical protein LOC100245630-8e-9At4g26160ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)O.I.H.G.S.X.
0.5072.70.961619820_s_atCA811381hypothetical protein LOC100245630-8e-9At4g26160ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)O.I.H.G.S.X.
0.4057.70.961612005_s_atCB004075--1e-38Atcg00440-O.I.H.G.S.X.
0.2124.00.961611279_s_atCB343789--0Atcg01010-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.5GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436357Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.289.9GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0123100, orthologous to the query gene, 1617846_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8194.8Os03g0123100At3g57870-SUMO E2 conjugating enzyme SCE16e-19At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.7189.6Os05g0516600At3g57870-Small GTP binding protein1e-32At3g16100ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)O.I.H.G.S.X.
0.6181.2Os10g0190000At3g57870-Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19)(Ubiquitin-protein ligase M) (Ubiquitin carrier proteinM) (Nedd8-conjugating enzyme Ubc12)4e-19At2g18600RUB1-conjugating enzyme, putativeO.I.H.G.S.X.
0.5877.0Os02g0586400At3g57870-Small GTP binding protein Rab27e-87At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.5877.0Os04g0568900At3g57870-RES protein2e-7At1g12760protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.H.G.S.X.
0.5877.0Os12g0168900At3g57870--4e-51At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.5777.0Os02g0520800At3g57870-Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP)5e-14At5g13430ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.5777.0Os07g0631100At3g57870-Putative zinc-binding region DUF701 domaincontaining protein2e-6At5g46030unknown proteinO.I.H.G.S.X.
0.5371.3Os06g0568200At3g57870-Vacuolar ATPase B subunit4e-111At1g20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanismO.I.H.G.S.X.
0.5371.3Os01g0866300At3g57870-VAMP-like protein YKT61 (AtYKT61)(Geranylgeranylated protein 1) (AtGP1)3e-6At5g58180ATYKT62O.I.H.G.S.X.
0.5168.7Os11g0169900At3g57870-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment)4e-63At1g75630AVA-P4O.I.H.G.S.X.
0.4863.7Os05g0418000At3g57870-GDP dissociation inhibitor protein OsGDI18e-32At3g59920ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)O.I.H.G.S.X.
0.4762.3Os06g0724100At3g57870-Zn-finger, FYVE type domain containing protein1e-3At1g20110zinc finger (FYVE type) family proteinO.I.H.G.S.X.
0.4762.3Os03g0820600At3g57870-Actin-depolymerizing factor 3 (ADF 3) (ZmABP3)(ZmADF3)3e-2At3g46000ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)O.I.H.G.S.X.
0.4458.1Os07g0239400At3g57870-Ethylene-responsive small GTP-binding protein4e-76At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.4152.4Os11g0433200At3g57870-Peptidase A22B, minor histocompatibility antigenH13 family protein5e-3At1g01650aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.4152.4Os06g0152100At3g57870-Profilin 28e-15At2g19760PRF1 (PROFILIN 1)O.I.H.G.S.X.
0.4051.1Os06g0175900At3g57870-Ubiquinol-cytochrome C reductase complexubiquinone-binding protein QP-C (EC 1.10.2.2)(Ubiquinol-cytochrome C reductase complex 8.2 kDaprotein)3e-7At5g05370ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.3846.9Os08g0282400At3g57870-Alpha-SNAP (Fragment)4e-2At3g56190ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)O.I.H.G.S.X.
0.3846.9Os08g0112800At3g57870-Conserved hypothetical protein2e-3At1g08480unknown proteinO.I.H.G.S.X.
0.3745.0Os02g0634900At3g57870-Proteasome subunit alpha type 2 (EC 3.4.25.1) (20Sproteasome alpha subunit B) (20S proteasome subunitalpha-2)2e-59At1g16470PAB1 (PROTEASOME SUBUNIT PAB1)O.I.H.G.S.X.
0.3745.0Os03g0402000At3g57870-Trafficking protein particle complex subunit 3(BET3 homolog)4e-17At5g54750transport protein particle (TRAPP) component Bet3, putativeO.I.H.G.S.X.
0.3644.0Os05g0489600At3g57870-NTGB1 (Fragment)1e-73At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.3644.0Os01g0707300At3g57870-Vesicle transport v-SNARE family protein6e-7At3g29100VTI13O.I.H.G.S.X.
0.3338.8Os07g0194000At3g57870-Vesicle-associated membrane protein 721(AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B)6e-35At1g04750VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)O.I.H.G.S.X.
0.3236.3Os11g0425600At3g57870-Four F5 protein family protein5e+0At5g42040RPN12b (Regulatory Particle Non-ATPase 12b)O.I.H.G.S.X.
0.3032.7Os05g0110600At3g57870-Rab5-interacting family protein6e-3At2g29020Rab5-interacting family proteinO.I.H.G.S.X.
0.2727.5Os12g0605400At3g57870-CROC-1-like protein (Fragment)9e-12At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.2625.6Os10g0320400At3g57870-ATP synthase gamma chain, mitochondrial precursor(EC 3.6.3.14)1e-48At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.
0.2321.2Os08g0478200At3g57870-ATP synthase D chain, mitochondrial (EC 3.6.3.14)1e-29At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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