CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617846_at

Gene name hypothetical protein LOC100242395
Homology with Arabidopsis Similar to At3g57870: SCE1 (SUMO CONJUGATION ENZYME 1) (HF=2e-47)

Module size 6 genes

NF 0.53

%ile 79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.96 1617846_at CF210020 hypothetical protein LOC100242395 - 2e-47 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.67 87.9 0.96 1622760_at CD719223 hypothetical protein LOC100266427 - 1e+0 At3g61920 unknown protein O.I. H.G. S.X.
0.60 81.9 0.96 1620683_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.50 72.7 0.96 1619820_s_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.40 57.7 0.96 1612005_s_at CB004075 - - 1e-38 Atcg00440 - O.I. H.G. S.X.
0.21 24.0 0.96 1611279_s_at CB343789 - - 0 Atcg01010 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 95.5 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.2 89.9 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.90199.1.A1_s_at, orthologous to the query gene, 1617846_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 92.5 GmaAffx.90199.1.A1_s_at At3g57870 - - 1e-44 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.57 78.8 GmaAffx.93466.1.S1_s_at At3g57870 - - 3e-10 At2g31305 INH3 (INHIBITOR-3) O.I. H.G. S.X.
0.43 60.6 Gma.7251.1.S1_a_at At3g57870 - - 2e-62 At5g03290 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative O.I. H.G. S.X.
0.40 57.1 Gma.7251.2.S1_a_at At3g57870 - - 4e-10 At3g09810 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative O.I. H.G. S.X.
0.33 46.1 GmaAffx.91997.1.S1_s_at At3g57870 - - 1e-62 At3g22950 ATARFC1 (ADP-ribosylation factor C1) O.I. H.G. S.X.
0.29 39.0 Gma.16469.1.S1_s_at At3g57870 - - 1e-8 At4g17720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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