CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617846_at

Gene name hypothetical protein LOC100242395
Homology with Arabidopsis Similar to At3g57870: SCE1 (SUMO CONJUGATION ENZYME 1) (HF=2e-47)

Module size 6 genes

NF 0.53

%ile 79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.96 1617846_at CF210020 hypothetical protein LOC100242395 - 2e-47 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.67 87.9 0.96 1622760_at CD719223 hypothetical protein LOC100266427 - 1e+0 At3g61920 unknown protein O.I. H.G. S.X.
0.60 81.9 0.96 1620683_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.50 72.7 0.96 1619820_s_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.40 57.7 0.96 1612005_s_at CB004075 - - 1e-38 Atcg00440 - O.I. H.G. S.X.
0.21 24.0 0.96 1611279_s_at CB343789 - - 0 Atcg01010 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 95.5 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.2 89.9 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57870, orthologous to the query gene, 1617846_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g57870 824956 SCE1 (SUMO CONJUGATION ENZYME 1) Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name. O.I. H.G. S.X.
0.33 38.1 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P O.I. H.G. S.X.
0.33 38.1 At5g64350 836556 FKBP12 (FK506-BINDING PROTEIN) F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOFPA O.I. H.G. S.X.
0.29 30.3 At5g20090 832131 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, membrane;MFPO O.I. H.G. S.X.
0.25 22.6 At1g49140 841337 NADH-ubiquinone oxidoreductase-related F:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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